RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 TOX2Q96NM4 488 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 HIST1H2AJQ99878 128 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 FDXACB1Q9BRP7 624 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-208ENST00000469585 TEX13BQ9BXU2 312 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 SPATC1LQ9H0A9 340 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 POLR3BQ9NW08 1133 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-208ENST00000469585 MORF4L1Q9UBU8 362 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 SEC63Q9UGP8 760 aaKnown RBP7.14□□□□□ -1.27
PTCD3-208ENST00000469585 SRRDQ9UH36 339 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 DPP7Q9UHL4 492 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 PTPN22Q9Y2R2 807 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.14□□□□□ -1.27
PTCD3-208ENST00000469585 CDY2AQ9Y6F7 541 aa7.14□□□□□ -1.27
PTCD3-208ENST00000469585 LOC285556D6RIA3 1793 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 NEDD4P46934 1319 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 CCDC196A0A1B0GTZ2 297 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 SLC15A5A6NIM6 579 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 DBX1A6NMT0 343 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 E7EWF7 191 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 MTHFD2P13995 350 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 GUCY1A2P33402 732 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 OAZ1P54368 228 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 EPHB1P54762 984 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 ODF1Q14990 250 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 SNRNP48Q6IEG0 339 aaKnown RBP7.13□□□□□ -1.27
PTCD3-208ENST00000469585 BLOC1S2Q6QNY1 142 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 GAREM2Q75VX8 874 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 ZBTB46Q86UZ6 589 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 TBC1D10CQ8IV04 446 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 CPXCR1Q8N123 301 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 ANKRD35Q8N283 1001 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 SHCBP1Q8NEM2 672 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 CHST13Q8NET6 341 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 ABHD8Q96I13 439 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 KRTAP9-2Q9BYQ4 174 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 BARX1Q9HBU1 254 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-208ENST00000469585 METTL14Q9HCE5 456 aaKnown RBP7.13□□□□□ -1.27
PTCD3-208ENST00000469585 GPR45Q9Y5Y3 372 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 CEP350Q5VT06 3117 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 CASP8AP2Q9UKL3 1982 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 SIPA1L1O43166 1804 aa7.13□□□□□ -1.27
PTCD3-208ENST00000469585 PFASO15067 1338 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 MYH4Q9Y623 1939 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 A0A1W2PRG0 241 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 VWA5AO00534 786 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 PRC1O43663 620 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 PLA2G6O60733 806 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 CYP21A2P08686 494 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 ZNF888P0CJ79 500 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-208ENST00000469585 AKAP17AQ02040 695 aaKnown RBP7.12□□□□□ -1.27
PTCD3-208ENST00000469585 PTH1RQ03431 593 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 SPIDRQ14159 915 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 SHROOM1Q2M3G4 852 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-208ENST00000469585 CPLX2Q6PUV4 134 aaKnown RBP7.12□□□□□ -1.27
PTCD3-208ENST00000469585 GPR142Q7Z601 462 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 ABRAQ8N0Z2 381 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 NUP133Q8WUM0 1156 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 LCORQ96JN0 433 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-208ENST00000469585 NEK1Q96PY6 1258 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 TMEM47Q9BQJ4 181 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 LZTS2Q9BRK4 669 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 OSBPL6Q9BZF3 934 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 ACAD9Q9H845 621 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 DNAI1Q9UI46 699 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 CCPG1Q9ULG6 757 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 CNPY2Q9Y2B0 182 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 VWA7Q9Y334 891 aa7.12□□□□□ -1.27
PTCD3-208ENST00000469585 PTPRFP10586 1907 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 LAMA4Q16363 1823 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 PHIPQ8WWQ0 1821 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 FRMPD2Q68DX3 1309 aaPredicted RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 IGKV6D-41A0A0C4DH26 115 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 KLHL33A6NCF5 533 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 MROH6A6NGR9 719 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 NOBOXO60393 691 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 NMT2O60551 498 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 ALAS1P13196 640 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 OSMP13725 252 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 CYP2B6P20813 491 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 FLT3LGP49771 235 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 RAB27AP51159 221 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 JAG1P78504 1218 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 PRKCZQ05513 592 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 PCOLCEQ15113 449 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 PPP2R5BQ15173 497 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 ANKRD1Q15327 319 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 CCDC174Q6PII3 467 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 ENAHQ8N8S7 591 aaPredicted RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 JADE3Q92613 823 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 CUL5Q93034 780 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 RRP36Q96EU6 259 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 WDR92Q96MX6 357 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 JAKMIP1Q96N16 626 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 NUP88Q99567 741 aaPredicted RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 LSG1Q9H089 658 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 IFT122Q9HBG6 1241 aa7.11□□□□□ -1.27
PTCD3-208ENST00000469585 LUC7LQ9NQ29 371 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 RBM28Q9NW13 759 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 ADD3Q9UEY8 706 aaKnown RBP7.11□□□□□ -1.27
PTCD3-208ENST00000469585 G3BP2Q9UN86 482 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms