RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 DENND2DQ9H6A0 471 aaPredicted RBP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SSU72Q9NP77 194 aaKnown RBP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 CYLDQ9NQC7 956 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 LRCH1Q9Y2L9 728 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 PCDHA11Q9Y5I1 949 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SIGLEC16A6NMB1 481 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 EML1O00423 815 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 PITPNM1O00562 1244 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 SLITRK3O94933 977 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 RTN3O95197 1032 aaPredicted RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 MAPTP10636 758 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ADCY8P40145 1251 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 VHLP40337 213 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 VAMP7P51809 220 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 CCL23P55773 120 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ALCAMQ13740 583 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 CCNG2Q16589 344 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 BRDTQ58F21 947 aaPredicted RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 FAM47EQ6ZV65 393 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 IFT43Q96FT9 208 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 CFAP57Q96MR6 1250 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 TTC25Q96NG3 672 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 PRDM12Q9H4Q4 367 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 CHST7Q9NS84 486 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 RGL1Q9NZL6 768 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 YBX2Q9Y2T7 364 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 UNC80Q8N2C7 3258 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 EMSYQ7Z589 1322 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 FOXO6A8MYZ6 492 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 NVLO15381 856 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZWINTO95229 277 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 GNAT1P11488 350 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 SP100P23497 879 aaPredicted RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 FMO1Q01740 532 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 DNAJC3Q13217 504 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 PPP2R5CQ13362 524 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ADGRE1Q14246 886 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZRSR2Q15696 482 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZC3H12AQ5D1E8 599 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZNF746Q6NUN9 644 aaPredicted RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 TMEM154Q6P9G4 183 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 C4orf50Q6ZRC1 276 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZCCHC9Q8N567 271 aaKnown RBP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 RNF217Q8TC41 542 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 LRRC8CQ8TDW0 803 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 SHC3Q92529 594 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 ZNF653Q96CK0 615 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 NACC1Q96RE7 527 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 NKX2-4Q9H2Z4 354 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 TMEM206Q9H813 350 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 PRDM6Q9NQX0 595 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 WDR35Q9P2L0 1181 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 THEGQ9P2T0 379 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 TBK1Q9UHD2 729 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.08□□□□□ -0.8
HDAC3-205ENST00000469550 SLC4A7Q9Y6M7 1214 aa10.08□□□□□ -0.8
HDAC3-205ENST00000469550 A0A0C4DFX4 3053 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 MYL3P08590 195 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SKIP12755 728 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 EPHB2P29323 1055 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 MAGEA4P43358 317 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 MFAP3P55082 362 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SNRPFP62306 86 aaKnown RBP10.07□□□□□ -0.8
HDAC3-205ENST00000469550 CDR2Q01850 454 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 GHRHRQ02643 423 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 PPP3CAQ08209 521 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SNX1Q13596 522 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 PDCD2Q16342 344 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-205ENST00000469550 CCDC142Q17RM4 750 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SLC5A9Q2M3M2 681 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 ODR4Q5SWX8 454 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 OR52E8Q6IFG1 317 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 ACAD10Q6JQN1 1059 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 CCDC62Q6P9F0 684 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 OTOP2Q7RTS6 562 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SESTD1Q86VW0 696 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 TRABDQ9H4I3 376 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 SLC28A3Q9HAS3 691 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 AVENQ9NQS1 362 aaPredicted RBP10.07□□□□□ -0.8
HDAC3-205ENST00000469550 TRMT13Q9NUP7 481 aaKnown RBP10.07□□□□□ -0.8
HDAC3-205ENST00000469550 PTPRSQ13332 1948 aa10.07□□□□□ -0.8
HDAC3-205ENST00000469550 IGLV3-22A0A075B6J6 115 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 PIK3CDO00329 1044 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 CCDC22O60826 627 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 CYP11B1P15538 503 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 POU3F3P20264 500 aaPredicted RBP10.06□□□□□ -0.8
HDAC3-205ENST00000469550 GCAP28676 217 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 TUBP50607 506 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 RPS6KA3P51812 740 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 DLG4P78352 724 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 KLF1Q13351 362 aaPredicted RBP10.06□□□□□ -0.8
HDAC3-205ENST00000469550 TTLL4Q14679 1199 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 TMED2Q15363 201 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 CTC1Q2NKJ3 1217 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 MUM1Q2TAK8 710 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 GNPTABQ3T906 1256 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 C1orf220Q5T0J3 134 aa10.06□□□□□ -0.8
HDAC3-205ENST00000469550 SEPT14Q6ZU15 432 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms