RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MAGEB5Q9BZ81 275 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 GRID1Q9ULK0 1009 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 PPEF2O14830 753 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 NDST1P52848 882 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 ATP11AP98196 1134 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 SURF1Q15526 300 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 MAMDC4Q6UXC1 1216 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 TRPM8Q7Z2W7 1104 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 CCDC33Q8N5R6 958 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 NIPA2Q8N8Q9 360 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 BBOF1Q8ND07 529 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 NLRP7Q8WX94 980 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 CPT1BQ92523 772 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 KLC4Q9NSK0 619 aa20.05■□□□□ 0.8
VIM-203ENST00000469543 CXCL11O14625 94 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 ITGAVP06756 1048 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 RPL22P35268 128 aaKnown RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 LMNB2Q03252 620 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 STAT4Q14765 748 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 TAPT1Q6NXT6 567 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 FUKQ8N0W3 1084 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 CKAP2Q8WWK9 683 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 NKD2Q969F2 451 aaPredicted RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 LHX5Q9H2C1 402 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 SLCO1B3Q9NPD5 702 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.04■□□□□ 0.8
VIM-203ENST00000469543 DRG1Q9Y295 367 aaKnown RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 A0A0G2JMZ2 1700 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 GAS2O43903 313 aaKnown RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 TCEA3O75764 348 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 KRT15P19012 456 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 GCLCP48506 637 aaPredicted RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 MNAT1P51948 309 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 DRICH1Q6PGQ1 229 aaPredicted RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 RFX6Q8HWS3 928 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 KLF6Q99612 283 aaPredicted RBP20.04■□□□□ 0.8
VIM-203ENST00000469543 MAF1Q9H063 256 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 GPATCH2LQ9NWQ4 482 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 PNMA3Q9UL41 463 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 STRIP2Q9ULQ0 834 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 USP18Q9UMW8 372 aa20.04■□□□□ 0.8
VIM-203ENST00000469543 E5RJQ4 531 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 AVILO75366 819 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 UBOX5O94941 541 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 RPA3P35244 121 aaPredicted RBP20.03■□□□□ 0.8
VIM-203ENST00000469543 RELL1Q8IUW5 271 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 RMDN2Q96LZ7 410 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 CFAP57Q96MR6 1250 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 CCDC77Q9BR77 488 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 KDM4CQ9H3R0 1056 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 ZNF408Q9H9D4 720 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 LGALS13Q9UHV8 139 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.03■□□□□ 0.8
VIM-203ENST00000469543 LRRC37A2A6NM11 1700 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 GOLGA8RI6L899 631 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 TMEM63AO94886 807 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 KIZQ2M2Z5 673 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 GLRA4Q5JXX5 417 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 SCUBE3Q8IX30 993 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 B3GNT5Q9BYG0 378 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 FAM49BQ9NUQ9 324 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 DDX56Q9NY93 547 aaKnown RBP20.03■□□□□ 0.8
VIM-203ENST00000469543 KCNH4Q9UQ05 1017 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 KAT6AQ92794 2004 aa20.03■□□□□ 0.8
VIM-203ENST00000469543 CLUHO75153 1309 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 COPS2P61201 443 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 DNAJC3Q13217 504 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 LACTB2Q53H82 288 aaPredicted RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 TRABD2AQ86V40 505 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 SPATA18Q8TC71 538 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 MPHOSPH6Q99547 160 aaKnown RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 ADPGKQ9BRR6 497 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.02■□□□□ 0.8
VIM-203ENST00000469543 TRIP11Q15643 1979 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 ALOX15BO15296 676 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 MED7O43513 233 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 ADORA2AP29274 412 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 ATP5DP30049 168 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 PHKA2P46019 1235 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 MGAT5Q09328 741 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 MORF4L2Q15014 288 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 SCYL2Q6P3W7 929 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 CYB5D1Q6P9G0 228 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 TBC1D1Q86TI0 1168 aaPredicted RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 IGDCC3Q8IVU1 814 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 RSAD2Q8WXG1 361 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 MAK16Q9BXY0 300 aaKnown RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 PRMT7Q9NVM4 692 aaPredicted RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 TSPAN16Q9UKR8 245 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 FARP1Q9Y4F1 1045 aaPredicted RBP20.02■□□□□ 0.8
VIM-203ENST00000469543 NME7Q9Y5B8 376 aa20.02■□□□□ 0.8
VIM-203ENST00000469543 FGFR1P11362 822 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 BASP1P80723 227 aaKnown RBP20.01■□□□□ 0.79
VIM-203ENST00000469543 TAP1Q03518 808 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 HIF1AQ16665 826 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 OR6B2Q6IFH4 312 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 PPP1R2P3Q6NXS1 205 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 C1orf228Q6PIY5 440 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 C3orf62Q6ZUJ4 267 aa20.01■□□□□ 0.79
VIM-203ENST00000469543 FITM2Q8N6M3 262 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms