RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MESP2Q0VG99 397 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 SEMA3BQ13214 749 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RUNX3Q13761 415 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 LBRQ14739 615 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 PCBP1Q15365 356 aaKnown RBP eCLIP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ELF2Q15723 593 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ITPRIPL2Q3MIP1 535 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 SEZ6Q53EL9 994 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TRIM61Q5EBN2 209 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ARSJQ5FYB0 599 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 DIEXFQ68CQ4 756 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 CDCA2Q69YH5 1023 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ALKAL1Q6UXT8 129 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 OTUD6AQ7L8S5 288 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RAB44Q7Z6P3 723 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 DNAJB7Q7Z6W7 309 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 NLRP8Q86W28 1048 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TREML1Q86YW5 311 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TMEFF1Q8IYR6 380 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RGL4Q8IZJ4 473 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 SYNPOQ8N3V7 929 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 CAMKK1Q8N5S9 505 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 DEFB119Q8N690 84 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ATAD1Q8NBU5 361 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 BICD2Q8TD16 824 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 BPIFB1Q8TDL5 484 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 CCDC12Q8WUD4 166 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM131Q92545 1883 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 TBC1D32Q96NH3 1257 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 FNBP1Q96RU3 617 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 HSD17B14Q9BPX1 270 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 EIF2AK1Q9BQI3 630 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 FAM83CQ9BQN1 747 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 SLC46A2Q9BY10 475 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 RNF26Q9BY78 433 aaPredicted RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 NFKBIZQ9BYH8 718 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 CCDC113Q9H0I3 377 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ATXN3LQ9H3M9 355 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ZSWIM4Q9H7M6 989 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 ZDHHC4Q9NPG8 344 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 AFF4Q9UHB7 1163 aaKnown RBP5.78□□□□□ -1.48
PTPN4-209ENST00000469511 MYLKQ15746 1914 aa5.78□□□□□ -1.48
PTPN4-209ENST00000469511 CFAP46Q8IYW2 2715 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 A0A1W2PNR3 127 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ANKRD33BA6NCL7 494 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PPEF2O14830 753 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 N4BP3O15049 544 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 CD59P13987 128 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 CPB1P15086 417 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 IFNAR1P17181 557 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 MZF1P28698 734 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 GJA4P35212 333 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 GUCY2FP51841 1108 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PSMD2Q13200 908 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PRPF4BQ13523 1007 aaKnown RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 FAM187BQ17R55 369 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 XKR4Q5GH76 650 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 TPGS2Q68CL5 300 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ANO7Q6IWH7 933 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 MOXD1Q6UVY6 613 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 TMEM150AQ86TG1 271 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 SLCO6A1Q86UG4 719 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ATCAYQ86WG3 371 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 EXOC8Q8IYI6 725 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PGBD3Q8N328 593 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ELMOD1Q8N336 334 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 CCDC33Q8N5R6 958 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 CCDC148Q8NFR7 591 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 BEST2Q8NFU1 509 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 GIPC2Q8TF65 315 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 USP13Q92995 863 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 E2F7Q96AV8 911 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 MSANTD3Q96H12 275 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ZBTB45Q96K62 511 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 FAM20AQ96MK3 541 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 GPR88Q9GZN0 384 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 ANKEF1Q9NU02 776 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PRMT7Q9NVM4 692 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 FAM13BQ9NYF5 915 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 TUBGCP4Q9UGJ1 667 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 EBF1Q9UH73 591 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 PPME1Q9Y570 386 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 MUC22E2RYF6 1773 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-209ENST00000469511 NID2Q14112 1375 aa5.77□□□□□ -1.49
PTPN4-209ENST00000469511 MTMR11A4FU01 709 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 SLC35F4A4IF30 521 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 H7C4K7 107 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 ACKR2O00590 384 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 SYN3O14994 580 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 TRAPPC3O43617 180 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 SH3BP5O60239 455 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 CCNT1O60563 726 aaKnown RBP5.76□□□□□ -1.49
PTPN4-209ENST00000469511 DKC1O60832 514 aaKnown RBP eCLIP5.76□□□□□ -1.49
PTPN4-209ENST00000469511 MED24O75448 989 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 LYPLA2O95372 231 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 APBB3O95704 486 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 SPATA31C1P0DKV0 1188 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 PLA2G2AP14555 144 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 ATF6P18850 670 aa5.76□□□□□ -1.49
PTPN4-209ENST00000469511 ITPKAP23677 461 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms