RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLC39A2Q9NP94 309 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 CRTAC1Q9NQ79 661 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 HPS4Q9NQG7 708 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 RCOR1Q9UKL0 485 aa17.73■□□□□ 0.43
CCDC28B-204ENST00000469003 PTPRDP23468 1912 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 ANAPC1Q9H1A4 1944 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 CST3P01034 146 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 FAM163BP0C2L3 166 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 DNM1Q05193 864 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 KNOP1Q1ED39 458 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 CC2D1AQ6P1N0 951 aaPredicted RBP17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 VSTM1Q6UX27 236 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 CEP57L1Q8IYX8 460 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 GPR161Q8N6U8 529 aaKnown RBP17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 CCDC127Q96BQ5 260 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 SPATA17Q96L03 361 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 CEP295NLQ96MC4 621 aa17.72■□□□□ 0.43
CCDC28B-204ENST00000469003 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 TRAV19A0A0A6YYK7 116 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 TACC1O75410 805 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 KRT37O76014 449 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 PDGFRBP09619 1106 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 USP17L7P0C7H9 530 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 SLFN14P0C7P3 912 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 FAM160A1Q05DH4 1040 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 PDGFRLQ15198 375 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 TRIM68Q6AZZ1 485 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 GRAMD1CQ8IYS0 662 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 FSIP1Q8NA03 581 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 RIN3Q8TB24 985 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 MYCBPAPQ8TBZ2 947 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 MRPL45Q9BRJ2 306 aaKnown RBP17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 GZF1Q9H116 711 aaPredicted RBP17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 SNX25Q9H3E2 840 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 EBF3Q9H4W6 596 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 TRPC7Q9HCX4 862 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 SERTAD1Q9UHV2 236 aa17.71■□□□□ 0.43
CCDC28B-204ENST00000469003 GPR179Q6PRD1 2367 aa17.71■□□□□ 0.42
CCDC28B-204ENST00000469003 KMT2BQ9UMN6 2715 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 OTOL1A6NHN0 477 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 K7ESF4 209 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 ACTN4O43707 911 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 EXOC3O60645 756 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 STAU1O95793 577 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 ARSAP15289 507 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 BDNFP23560 247 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 GNL1P36915 607 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 GRIK1P39086 918 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 TNNC1P63316 161 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 AMPD2Q01433 879 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 CYP27A1Q02318 531 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 MTF1Q14872 753 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 WDR72Q3MJ13 1102 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 TMEM196Q5HYL7 178 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 SPRYD3Q8NCJ5 442 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 GOLGA5Q8TBA6 731 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 ZNF516Q92618 1163 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 PCED1BQ96HM7 432 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 CNTNAP3BQ96NU0 1288 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 SLC22A12Q96S37 553 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 CNTNAP3Q9BZ76 1288 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 GCNT4Q9P109 453 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 RAB23Q9ULC3 237 aa17.7■□□□□ 0.42
CCDC28B-204ENST00000469003 CACNA1GO43497 2377 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 HELZP42694 1942 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 CHURC1-FNTBB4DL54 471 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 TRDMT1O14717 391 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 TRIM66O15016 1216 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 KLRC4O43908 158 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 CKMP06732 381 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 ANXA13P27216 316 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 ATICP31939 592 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 FNTBP49356 437 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 DMWDQ09019 674 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 GRSF1Q12849 480 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 USP4Q13107 963 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 TRPC3Q13507 836 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 ZNF77Q15935 545 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 MDH1BQ5I0G3 518 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 FSTL4Q6MZW2 842 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 DENND5BQ6ZUT9 1274 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 LONP2Q86WA8 852 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 OR6B3Q8NGW1 331 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 CHFRQ96EP1 664 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 PAGE5Q96GU1 130 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 CYP2S1Q96SQ9 504 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 C2orf42Q9NWW7 574 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 DLL3Q9NYJ7 618 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 EHD2Q9NZN4 543 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 GMEB2Q9UKD1 530 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 NME7Q9Y5B8 376 aa17.69■□□□□ 0.42
CCDC28B-204ENST00000469003 C2orf78A6NCI8 922 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 TCF3P15923 654 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 PFKLP17858 780 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 HOXA6P31267 233 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 CNR2P34972 360 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 PDE6CP51160 858 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 MYL6P60660 151 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 PSMD2Q13200 908 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 KCNB1Q14721 858 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms