RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 MMS19Q96T76 1030 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 UBE4BO95155 1302 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 TRAV19A0A0A6YYK7 116 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 MED19A0JLT2 244 aaPredicted RBP20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CLIC2O15247 247 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CKMP06732 381 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 PDGFRBP09619 1106 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 USP17L7P0C7H9 530 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 TNNI1P19237 187 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 SDHBP21912 280 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 WARSP23381 471 aaKnown RBP20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CASP1P29466 404 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CYP2J2P51589 502 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 AMPD2Q01433 879 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 FAM160A1Q05DH4 1040 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 SPEM2Q0P670 501 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 GRSF1Q12849 480 aaKnown RBP eCLIP20.49■□□□□ 0.871e-8■■■■■ 32.5
COL9A3-206ENST00000466532 MTF1Q14872 753 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 PDGFRLQ15198 375 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 MAPRE1Q15691 268 aaKnown RBP20.49■□□□□ 0.87
COL9A3-206ENST00000466532 FSTL4Q6MZW2 842 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 FSIP1Q8NA03 581 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 TTC16Q8NEE8 873 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 SCFD1Q8WVM8 642 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CHFRQ96EP1 664 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 FNBP1Q96RU3 617 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 SLC22A12Q96S37 553 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CYP2S1Q96SQ9 504 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CGRRF1Q99675 332 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 BLZF1Q9H2G9 400 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 CRTAC1Q9NQ79 661 aa20.49■□□□□ 0.87
COL9A3-206ENST00000466532 PRR5-ARHGAP8B1AHC4 643 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 TRDMT1O14717 391 aaKnown RBP20.48■□□□□ 0.87
COL9A3-206ENST00000466532 CST3P01034 146 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-206ENST00000466532 ZSCAN22P10073 491 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-206ENST00000466532 BDNFP23560 247 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 HOXC13P31276 330 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 GRIK1P39086 918 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 ARHGAP8P85298 464 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 CYP27A1Q02318 531 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 EHHADHQ08426 723 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 PSMD6Q15008 389 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 PKN3Q6P5Z2 889 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 VSTM1Q6UX27 236 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 HS2ST1Q7LGA3 356 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 XXYLT1Q8NBI6 393 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 CCDC127Q96BQ5 260 aa20.48■□□□□ 0.87
COL9A3-206ENST00000466532 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 C2orf78A6NCI8 922 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 F13A1P00488 732 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 HSP90AA1P07900 732 aaKnown RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 RETP07949 1114 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 HOXA6P31267 233 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 SNRPFP62306 86 aaKnown RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 CYP24A1Q07973 514 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 USP4Q13107 963 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 ZNF77Q15935 545 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 HSCBQ8IWL3 235 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 CPA6Q8N4T0 437 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 ARL14EPQ8N8R7 260 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 PCED1BQ96HM7 432 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 SPATA17Q96L03 361 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 MRPL45Q9BRJ2 306 aaKnown RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 SNX25Q9H3E2 840 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 DUS2Q9NX74 493 aaKnown RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 FAM13BQ9NYF5 915 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 CDV3Q9UKY7 258 aaKnown RBP20.47■□□□□ 0.87
COL9A3-206ENST00000466532 PCDHA7Q9UN72 937 aa20.47■□□□□ 0.87
COL9A3-206ENST00000466532 MYOFQ9NZM1 2061 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 EGFP01133 1207 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 PDIA4P13667 645 aaKnown RBP20.46■□□□□ 0.87
COL9A3-206ENST00000466532 ANXA13P27216 316 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 GJA4P35212 333 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 GNL1P36915 607 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-206ENST00000466532 AFMP43652 599 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 ME1P48163 572 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 IFNAR2P48551 515 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 KCNB1Q14721 858 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 CEP68Q76N32 757 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 WDR5BQ86VZ2 330 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 OR6B3Q8NGW1 331 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 MYCBPAPQ8TBZ2 947 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 OSCP1Q8WVF1 389 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 P2RY13Q9BPV8 354 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 ECT2Q9H8V3 914 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 SLC39A2Q9NP94 309 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 GCNT4Q9P109 453 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 WNT6Q9Y6F9 365 aa20.46■□□□□ 0.87
COL9A3-206ENST00000466532 LRP3O75074 770 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 ATG13O75143 517 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 RNF40O75150 1001 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 TACC1O75410 805 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 HDCP19113 662 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 DRD1P21728 446 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 GALK1P51570 392 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 ATXN1P54253 815 aaKnown RBP20.45■□□□□ 0.86
COL9A3-206ENST00000466532 TNNC1P63316 161 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 CUL4BQ13620 913 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 BMT2Q1RMZ1 405 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms