RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MYRFLQ96LU7 910 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ASB16Q96NS5 453 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 GCNAQ96QF7 691 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 RPP25Q9BUL9 199 aaKnown RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SDCBP2Q9H190 292 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 NUP62CLQ9H1M0 184 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ATXN3LQ9H3M9 355 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SMOC2Q9H3U7 446 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 TRPV4Q9HBA0 871 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ZFP14Q9HCL3 533 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ZNF334Q9HCZ1 680 aaPredicted RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SLC2A4RGQ9NR83 387 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 UXTQ9UBK9 157 aaPredicted RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 CTNND2Q9UQB3 1225 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 COQ4Q9Y3A0 265 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 NME7Q9Y5B8 376 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SLC38A8A6NNN8 435 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 TRIM66O15016 1216 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 NARSO43776 548 aaKnown RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 NOL4O94818 638 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 HMGA1P17096 107 aaKnown RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 BDNFP23560 247 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ANXA13P27216 316 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 WEE1P30291 646 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 GRIK1P39086 918 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 RAP1GAPP47736 663 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 NOP14P78316 857 aaKnown RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 CCDC142Q17RM4 750 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 WDR44Q5JSH3 913 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 TANGO2Q6ICL3 276 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 FBXL6Q8N531 539 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 TTC39CQ8N584 583 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ZSCAN18Q8TBC5 510 aaPredicted RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ELMO3Q96BJ8 720 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ZSWIM3Q96MP5 696 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 KXD1Q9BQD3 176 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ELOVL4Q9GZR5 314 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 NIF3L1Q9GZT8 377 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 DPEP3Q9H4B8 488 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 SLITRK6Q9H5Y7 841 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 FAM124BQ9H5Z6 455 aaPredicted RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 IL21Q9HBE4 155 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 EHD2Q9NZN4 543 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 RWDD2AQ9UIY3 292 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 FBXL21Q9UKT6 434 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ZNF638Q14966 1978 aaKnown RBP13.88□□□□□ -0.19
COL28A1-206ENST00000465339 ATP8B3O60423 1300 aa13.88□□□□□ -0.19
COL28A1-206ENST00000465339 MYH10P35580 1976 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 OBSL1O75147 1896 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 NUP210Q8TEM1 1887 aaPredicted RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 NRG2O14511 850 aaPredicted RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 PMM2O15305 246 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 F11P03951 625 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 DDX6P26196 483 aaKnown RBP eCLIP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 GPR15P49685 360 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 NDST1P52848 882 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 STX17P56962 302 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 NLRP12P59046 1061 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 GPC5P78333 572 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 INCA1Q0VD86 236 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 GPR158Q5T848 1215 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 SDHAF4Q5VUM1 108 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 SUGP1Q8IWZ8 645 aaKnown RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 ST13P5Q8NFI4 369 aaPredicted RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 SEMA4DQ92854 862 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 MARVELD3Q96A59 401 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 C8orf48Q96LL4 319 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 SRRTQ9BXP5 876 aaKnown RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 B3GNT5Q9BYG0 378 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 TASP1Q9H6P5 420 aa13.87□□□□□ -0.19
COL28A1-206ENST00000465339 APOBEC3GQ9HC16 384 aaKnown RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 MAGED2Q9UNF1 606 aaPredicted RBP13.87□□□□□ -0.19
COL28A1-206ENST00000465339 CFHP08603 1231 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 CCDC192P0DO97 292 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 FCARP24071 287 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 FMO5P49326 533 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 MARSP56192 900 aaKnown RBP13.86□□□□□ -0.19
COL28A1-206ENST00000465339 PFKPQ01813 784 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 CETN1Q12798 172 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 CBWD6Q4V339 395 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 CBWD3Q5JTY5 395 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 CBWD5Q5RIA9 395 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 ACOT1Q86TX2 421 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 MED10Q9BTT4 135 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 TRMT61BQ9BVS5 477 aaKnown RBP13.86□□□□□ -0.19
COL28A1-206ENST00000465339 NT5C1AQ9BXI3 368 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 PLA2G2FQ9BZM2 168 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL28A1-206ENST00000465339 DACH1Q9UI36 760 aa13.86□□□□□ -0.19
COL28A1-206ENST00000465339 P4HA2O15460 535 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 LRRN2O75325 713 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 CILPO75339 1184 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 PSMC3P17980 439 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 COL9A1P20849 921 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 CT47A1Q5JQC4 288 aaPredicted RBP13.85□□□□□ -0.19
COL28A1-206ENST00000465339 PPP1R15BQ5SWA1 713 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 STXBP5Q5T5C0 1151 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 SMYD5Q6GMV2 418 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 DENND5BQ6ZUT9 1274 aa13.85□□□□□ -0.19
COL28A1-206ENST00000465339 TMEM150AQ86TG1 271 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms