RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 PLEKHO2Q8TD55 490 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 SPATA32Q96LK8 384 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 KIF9Q9HAQ2 790 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 TRPC7Q9HCX4 862 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 HPS4Q9NQG7 708 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 EXOC1Q9NV70 894 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 NME7Q9Y5B8 376 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 TCHHQ07283 1943 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 GPR179Q6PRD1 2367 aa20.15■□□□□ 0.82
SF3A1-205ENST00000463818 PHACTR2O75167 634 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 ID4P47928 161 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 CASP4P49662 377 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 TNNC1P63316 161 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 RUNX3Q13761 415 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 ZNF268Q14587 947 aaPredicted RBP20.14■□□□□ 0.81
SF3A1-205ENST00000463818 MDH1BQ5I0G3 518 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 TRIM68Q6AZZ1 485 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 CC2D1AQ6P1N0 951 aaPredicted RBP20.14■□□□□ 0.81
SF3A1-205ENST00000463818 FSIP1Q8NA03 581 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 KIAA0895Q8NCT3 520 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 RIN3Q8TB24 985 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 PCED1BQ96HM7 432 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 SPATA17Q96L03 361 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 EBF3Q9H4W6 596 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 DMAC2Q9NW81 257 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 NXF1Q9UBU9 619 aaKnown RBP20.14■□□□□ 0.81
SF3A1-205ENST00000463818 USP25Q9UHP3 1055 aa20.14■□□□□ 0.81
SF3A1-205ENST00000463818 OTOL1A6NHN0 477 aaPredicted RBP20.13■□□□□ 0.81
SF3A1-205ENST00000463818 STAU1O95793 577 aaKnown RBP20.13■□□□□ 0.81
SF3A1-205ENST00000463818 USP17L7P0C7H9 530 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 PTPN1P18031 435 aaKnown RBP20.13■□□□□ 0.81
SF3A1-205ENST00000463818 ATICP31939 592 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 Q6ZS52 159 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 PARD3BQ8TEW8 1205 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 SLC22A12Q96S37 553 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 XYLT2Q9H1B5 865 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 EPC1Q9H2F5 836 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 HPSEQ9Y251 543 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 TICRRQ7Z2Z1 1910 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 COL4A2P08572 1712 aa20.13■□□□□ 0.81
SF3A1-205ENST00000463818 TRAV19A0A0A6YYK7 116 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 ARSAP15289 507 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 ANXA13P27216 316 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 KRT85P78386 507 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 FAM160A1Q05DH4 1040 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 BIRC3Q13489 604 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 CCINQ13939 588 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 SLC9A9Q8IVB4 645 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 SYNPOQ8N3V7 929 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 ARL14EPQ8N8R7 260 aaPredicted RBP20.12■□□□□ 0.81
SF3A1-205ENST00000463818 TTC16Q8NEE8 873 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 SYAP1Q96A49 352 aaPredicted RBP20.12■□□□□ 0.81
SF3A1-205ENST00000463818 CEP295NLQ96MC4 621 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 KCTD10Q9H3F6 313 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 GCNT4Q9P109 453 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 NCDNQ9UBB6 729 aa20.12■□□□□ 0.81
SF3A1-205ENST00000463818 SMG5Q9UPR3 1016 aaKnown RBP20.12■□□□□ 0.81
SF3A1-205ENST00000463818 SPTBN4Q9H254 2564 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 C2orf78A6NCI8 922 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 LRRIQ3A6PVS8 624 aaPredicted RBP20.11■□□□□ 0.81
SF3A1-205ENST00000463818 A8MXQ7 604 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 C4BPAP04003 597 aaKnown RBP20.11■□□□□ 0.81
SF3A1-205ENST00000463818 CKMP06732 381 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 HDCP19113 662 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 AP3M2P53677 418 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 USP46P62068 366 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 PDGFRLQ15198 375 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 TDRD10Q5VZ19 366 aaKnown RBP20.11■□□□□ 0.81
SF3A1-205ENST00000463818 DENND5BQ6ZUT9 1274 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 C8orf48Q96LL4 319 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 DPEP3Q9H4B8 488 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 C2orf42Q9NWW7 574 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 OTOGLQ3ZCN5 2332 aa20.11■□□□□ 0.81
SF3A1-205ENST00000463818 F8VP50 259 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 PDXKO00764 312 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 TRDMT1O14717 391 aaKnown RBP20.1■□□□□ 0.81
SF3A1-205ENST00000463818 TRIM66O15016 1216 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 MYL1P05976 194 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 SYKP43405 635 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 CDH8P55286 799 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 CLDN10P78369 228 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 AMPD2Q01433 879 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 DMWDQ09019 674 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 GRSF1Q12849 480 aaKnown RBP eCLIP20.1■□□□□ 0.81
SF3A1-205ENST00000463818 MTF1Q14872 753 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 ZNF77Q15935 545 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 TMEM174Q8WUU8 243 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 B3GNT5Q9BYG0 378 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 DUS2Q9NX74 493 aaKnown RBP20.1■□□□□ 0.81
SF3A1-205ENST00000463818 TRPM5Q9NZQ8 1165 aa20.1■□□□□ 0.81
SF3A1-205ENST00000463818 FANCMQ8IYD8 2048 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 CHURC1-FNTBB4DL54 471 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 K7ESF4 209 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 PAPSS2O95340 614 aaPredicted RBP20.09■□□□□ 0.81
SF3A1-205ENST00000463818 NR3C1P04150 777 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 RPN1P04843 607 aaKnown RBP20.09■□□□□ 0.81
SF3A1-205ENST00000463818 FNTBP49356 437 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 GALK1P51570 392 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 NDUFA8P51970 172 aa20.09■□□□□ 0.81
SF3A1-205ENST00000463818 NCOA4Q13772 614 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms