RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CEP72Q9P209 647 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 DNMT3BQ9UBC3 853 aaKnown RBP21.01■□□□□ 0.95
COL9A3-204ENST00000463487 C2orf16Q68DN1 1984 aa21.01■□□□□ 0.95
COL9A3-204ENST00000463487 CLDN5O00501 218 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 AP1G2O75843 785 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 VDRP11473 427 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 CCDC130P13994 396 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 CD19P15391 556 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 STILQ15468 1287 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 ARHGAP44Q17R89 818 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 FUKQ8N0W3 1084 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 PLCD3Q8N3E9 789 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 UBR7Q8N806 425 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 C12orf29Q8N999 325 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 RBBP8NLQ8NC74 664 aaPredicted RBP21■□□□□ 0.95
COL9A3-204ENST00000463487 GIPC2Q8TF65 315 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 LPIN3Q9BQK8 851 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 HCFC1R1Q9NWW0 138 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 HESX1Q9UBX0 185 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 CDH22Q9UJ99 828 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 DNAJC12Q9UKB3 198 aa21■□□□□ 0.95
COL9A3-204ENST00000463487 MRPS23Q9Y3D9 190 aaKnown RBP21■□□□□ 0.95
COL9A3-204ENST00000463487 ZFP37Q9Y6Q3 630 aaPredicted RBP21■□□□□ 0.95
COL9A3-204ENST00000463487 ACO1P21399 889 aaKnown RBP20.99■□□□□ 0.95
COL9A3-204ENST00000463487 ADORA2BP29275 332 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 CDC25CP30307 473 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 ARHGAP17Q68EM7 881 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 GET4Q7L5D6 327 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-204ENST00000463487 KAT5Q92993 513 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 RPGRIP1Q96KN7 1286 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 KREMEN1Q96MU8 473 aa20.99■□□□□ 0.95
COL9A3-204ENST00000463487 F8VP50 259 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 MICAL2O94851 1124 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 TPM3P06753 285 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 MYL4P12829 197 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 GBP2P32456 591 aaPredicted RBP20.98■□□□□ 0.95
COL9A3-204ENST00000463487 USP8P40818 1118 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 EPHA5P54756 1037 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 KCNMA1Q12791 1236 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 RAPGEF1Q13905 1077 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 SYCP1Q15431 976 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 KLHDC7AQ5VTJ3 777 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 DENND5BQ6ZUT9 1274 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 NEK11Q8NG66 645 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 ADAMTS19Q8TE59 1207 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 TRMT2BQ96GJ1 504 aaKnown RBP20.98■□□□□ 0.95
COL9A3-204ENST00000463487 ERGIC2Q96RQ1 377 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 SIX2Q9NPC8 291 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 MAGED2Q9UNF1 606 aaPredicted RBP20.98■□□□□ 0.95
COL9A3-204ENST00000463487 CNTN6Q9UQ52 1028 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 PTPRDP23468 1912 aa20.98■□□□□ 0.95
COL9A3-204ENST00000463487 SLC38A8A6NNN8 435 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 MED7O43513 233 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 NOL4O94818 638 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 RTN3O95197 1032 aaPredicted RBP20.97■□□□□ 0.95
COL9A3-204ENST00000463487 UCHL3P15374 230 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 GPR15P49685 360 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 NTHL1P78549 312 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 ZP2Q05996 745 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 ARHGAP15Q53QZ3 475 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 PPP1R26Q5T8A7 1209 aaPredicted RBP20.97■□□□□ 0.95
COL9A3-204ENST00000463487 GJB7Q6PEY0 223 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 APTXQ7Z2E3 356 aaKnown RBP20.97■□□□□ 0.95
COL9A3-204ENST00000463487 GPR152Q8TDT2 470 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 SHC3Q92529 594 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 PNPLA8Q9NP80 782 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 RTN4Q9NQC3 1192 aaKnown RBP20.97■□□□□ 0.95
COL9A3-204ENST00000463487 FAM207AQ9NSI2 230 aaPredicted RBP20.97■□□□□ 0.95
COL9A3-204ENST00000463487 ZMYM5Q9UJ78 669 aa20.97■□□□□ 0.95
COL9A3-204ENST00000463487 DENND4AQ7Z401 1863 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 NPR3P17342 541 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 SSTR3P32745 418 aaPredicted RBP20.96■□□□□ 0.95
COL9A3-204ENST00000463487 BCAT1P54687 386 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 MAP3K7CLP57077 242 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 BPIFB4P59827 614 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 SDHAF4Q5VUM1 108 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 PAQR9Q6ZVX9 377 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 UHRF1Q96T88 793 aaPredicted RBP20.96■□□□□ 0.95
COL9A3-204ENST00000463487 DUSP16Q9BY84 665 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 GPR88Q9GZN0 384 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 CSNK1G1Q9HCP0 422 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 CDH7Q9ULB5 785 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 XIRP2A4UGR9 3374 aa20.96■□□□□ 0.95
COL9A3-204ENST00000463487 A0A1B0GTH6 734 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 SP100P23497 879 aaPredicted RBP20.95■□□□□ 0.94
COL9A3-204ENST00000463487 GABRR2P28476 465 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 PPP3CCP48454 512 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 ZNF132P52740 706 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 FANCCQ00597 558 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 APBA1Q02410 837 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 PTK2Q05397 1052 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 GOLGA7BQ2TAP0 167 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 TMC8Q8IU68 726 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 FMNL3Q8IVF7 1028 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 HS6ST3Q8IZP7 471 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 NUP93Q8N1F7 819 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 ANKRD52Q8NB46 1076 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 FEZF2Q8TBJ5 459 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 MYRFLQ96LU7 910 aa20.95■□□□□ 0.94
COL9A3-204ENST00000463487 SLITRK1Q96PX8 696 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms