RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	NCAM1	P13591	858 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	TGM2	P21980	687 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	SLC11A2	P49281	568 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	YWHAH	Q04917	246 aa	Predicted RBP	12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	HSDL1	Q3SXM5	330 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	MGAT5B	Q3V5L5	792 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	TIGD7	Q6NT04	549 aa	Predicted RBP	12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	SLC20A1	Q8WUM9	679 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	ZNF512	Q96ME7	567 aa	Predicted RBP	12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	PURB	Q96QR8	312 aa	Known RBP	12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	PIDD1	Q9HB75	910 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	TRIM17	Q9Y577	477 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	PCDHB5	Q9Y5E4	795 aa		12.3	□□□□□ -0.44
RBM39-223	ENST00000463004	SEPT4	O43236	478 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	RAD51C	O43502	376 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	CYP1A2	P05177	515 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	PPP2R2A	P63151	447 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	IRX4	P78413	519 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	SMARCB1	Q12824	385 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	SEPT6	Q14141	434 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	CTXN3	Q4LDR2	81 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	TOP6BL	Q8N6T0	577 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	NKX2-3	Q8TAU0	364 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	TRIM56	Q9BRZ2	755 aa	Known RBP	12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	SIK2	Q9H0K1	926 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	KIF9	Q9HAQ2	790 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	PTCH2	Q9Y6C5	1203 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	CAND2	O75155	1236 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	ANXA9	O76027	345 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	UROD	P06132	367 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	FLT3LG	P49771	235 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	ARHGAP15	Q53QZ3	475 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	GLIS3	Q8NEA6	775 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	MS4A14	Q96JA4	679 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	DMAP1	Q9NPF5	467 aa	Predicted RBP	12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	DDX43	Q9NXZ2	648 aa	Known RBP	12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	TSPAN16	Q9UKR8	245 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	MYH14	Q7Z406	1995 aa	Known RBP	12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	RASA4B	C9J798	803 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	PI4K2B	G5E9Z4	385 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	ADCY6	O43306	1168 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	RASA4	O43374	803 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	FAM163B	P0C2L3	166 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	NAPEPLD	Q6IQ20	393 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	ITIH5	Q86UX2	942 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	LZTR1	Q8N653	840 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	BRI3BP	Q8WY22	251 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	12.29	□□□□□ -0.44	1e-15	■□□□□ 10.2
RBM39-223	ENST00000463004	WDCP	Q9H6R7	721 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	CDH9	Q9ULB4	789 aa		12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	PRG3	Q9Y2Y8	225 aa	Predicted RBP	12.29	□□□□□ -0.44
RBM39-223	ENST00000463004	MOXD2P	A6NHM9	499 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	ARHGAP42	A6NI28	874 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	AMH	P03971	560 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	DGKZ	Q13574	1117 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SLFN11	Q7Z7L1	901 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	NOP9	Q86U38	636 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	NFKBIZ	Q9BYH8	718 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	GHR	P10912	638 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	PRKAR2A	P13861	404 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	NR2C2	P49116	596 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	GRIK3	Q13003	919 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	RPS6KA2	Q15349	733 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SPDYC	Q5MJ68	293 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SPOCD1	Q6ZMY3	1216 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	ZBED8	Q8IZ13	594 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	CALML6	Q8TD86	181 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	RBM15	Q96T37	977 aa	Known RBP eCLIP	12.28	□□□□□ -0.44	1e-18	■■■□□ 14.6
RBM39-223	ENST00000463004	LHX5	Q9H2C1	402 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004		M0QYT0	321 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	DHX15	O43143	795 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	MOCS2	O96007	188 aa	Predicted RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	DNAJB2	P25686	324 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	LDLRAD1	Q5T700	205 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SPOPL	Q6IQ16	392 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	ZC3H18	Q86VM9	953 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	PPHLN1	Q8NEY8	458 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	APBB2	Q92870	758 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SEPT5	Q99719	369 aa	Predicted RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	PPP1R12C	Q9BZL4	782 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	DDIT4	Q9NX09	232 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	USP18	Q9UMW8	372 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	NEU2	Q9Y3R4	380 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	TUFM	P49411	452 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	MNAT1	P51948	309 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SLC6A3	Q01959	620 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	CYP4A22	Q5TCH4	519 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	CXCL17	Q6UXB2	119 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	KATNAL2	Q8IYT4	538 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	GIMAP7	Q8NHV1	300 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	TFB1M	Q8WVM0	346 aa	Known RBP	12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	RXFP2	Q8WXD0	754 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	PACSIN1	Q9BY11	444 aa		12.28	□□□□□ -0.44
RBM39-223	ENST00000463004	SIGLEC16	A6NMB1	481 aa		12.27	□□□□□ -0.44
RBM39-223	ENST00000463004	ATMIN	O43313	823 aa	Predicted RBP	12.27	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms