RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 GCNT4Q9P109 453 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 SLC8A2Q9UPR5 921 aa17.24■□□□□ 0.35
COL7A1-204ENST00000462475 EPG5Q9HCE0 2579 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 ZNF233A6NK53 670 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 STX6O43752 255 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 ATG13O75143 517 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 RPP40O75818 363 aaKnown RBP17.23■□□□□ 0.35
COL7A1-204ENST00000462475 TNNC2P02585 160 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 USP17L7P0C7H9 530 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 AMPD2Q01433 879 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 CCDC6Q16204 474 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 EML3Q32P44 896 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 C4orf50Q6ZRC1 276 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 STXBP4Q6ZWJ1 553 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 DPH6Q7L8W6 267 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 KBTBD6Q86V97 674 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 ARL14EPQ8N8R7 260 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-204ENST00000462475 SH3RF2Q8TEC5 729 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 HHIPQ96QV1 700 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 KBTBD4Q9NVX7 518 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 CDH9Q9ULB4 789 aa17.23■□□□□ 0.35
COL7A1-204ENST00000462475 R3HCC1Q9Y3T6 440 aaKnown RBP17.23■□□□□ 0.35
COL7A1-204ENST00000462475 CCDC163A0A0D9SF12 145 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 AXIN1O15169 862 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 DRD1P21728 446 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 WARSP23381 471 aaKnown RBP17.22■□□□□ 0.35
COL7A1-204ENST00000462475 BDNFP23560 247 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 IFNAR2P48551 515 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 USP46P62068 366 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 ASIC1P78348 528 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 KCNB1Q14721 858 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 SURF1Q15526 300 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 DUOXA2Q1HG44 320 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 EPM2AIP1Q7L775 607 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-204ENST00000462475 WDR49Q8IV35 697 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 ATP2A3Q93084 1043 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 DHX58Q96C10 678 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 ARRDC1-AS1Q9H2J1 176 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 MAGEC2Q9UBF1 373 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-204ENST00000462475 NME7Q9Y5B8 376 aa17.22■□□□□ 0.35
COL7A1-204ENST00000462475 TPRP12270 2363 aaKnown RBP17.22■□□□□ 0.35
COL7A1-204ENST00000462475 SPTLC2O15270 562 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 EIF3DO15371 548 aaKnown RBP eCLIP17.21■□□□□ 0.35
COL7A1-204ENST00000462475 EPN2O95208 641 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 PDGFRBP09619 1106 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 CCDC192P0DO97 292 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 RAP1GAPP47736 663 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 SF3A2Q15428 464 aaKnown RBP17.21■□□□□ 0.35
COL7A1-204ENST00000462475 PPM1JQ5JR12 505 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 VSTM1Q6UX27 236 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 TRAPPC11Q7Z392 1133 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 CACNA2D4Q7Z3S7 1137 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 FSIP1Q8NA03 581 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 RPLP0P6Q8NHW5 317 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 CD101Q93033 1021 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 PCED1BQ96HM7 432 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 SPATA17Q96L03 361 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 MMS19Q96T76 1030 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 MRPL45Q9BRJ2 306 aaKnown RBP17.21■□□□□ 0.35
COL7A1-204ENST00000462475 AGPAT3Q9NRZ7 376 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 TFIP11Q9UBB9 837 aaKnown RBP17.21■□□□□ 0.35
COL7A1-204ENST00000462475 ARHGAP26Q9UNA1 814 aa17.21■□□□□ 0.35
COL7A1-204ENST00000462475 ACACBO00763 2458 aa17.21■□□□□ 0.34
COL7A1-204ENST00000462475 TGFB1I1O43294 461 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 ADRB1P08588 477 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 DLATP10515 647 aaKnown RBP17.2■□□□□ 0.34
COL7A1-204ENST00000462475 HDCP19113 662 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 GRIK1P39086 918 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 ZXDBP98169 803 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 CYP27A1Q02318 531 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 SNRNP35Q16560 246 aaKnown RBP17.2■□□□□ 0.34
COL7A1-204ENST00000462475 FBXO43Q4G163 708 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 AASDHQ4L235 1098 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-204ENST00000462475 MDH1BQ5I0G3 518 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 FAM26FQ5R3K3 315 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 SHC4Q6S5L8 630 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 DENND5BQ6ZUT9 1274 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 RDH13Q8NBN7 331 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 LOXL4Q96JB6 756 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 CGRRF1Q99675 332 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 LRRC27Q9C0I9 530 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 LINC00597Q9H2U6 94 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 CUEDC2Q9H467 287 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 KIAA1586Q9HCI6 787 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 RXFP3Q9NSD7 469 aa17.2■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF638Q14966 1978 aaKnown RBP17.2■□□□□ 0.34
COL7A1-204ENST00000462475 K7ELQ4 463 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-204ENST00000462475 CLIC2O15247 247 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 FOXD2O60548 495 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-204ENST00000462475 PPP6R2O75170 966 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 AKAP3O75969 853 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 CST3P01034 146 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-204ENST00000462475 TCF3P15923 654 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 CYP2J2P51589 502 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 MAPRE1Q15691 268 aaKnown RBP17.19■□□□□ 0.34
COL7A1-204ENST00000462475 NELFCDQ8IXH7 590 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 CAMKK1Q8N5S9 505 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 MYCBPAPQ8TBZ2 947 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 ZNF507Q8TCN5 953 aa17.19■□□□□ 0.34
COL7A1-204ENST00000462475 EXOC4Q96A65 974 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms