RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 GDAP2Q9NXN4 497 aa13.4□□□□□ -0.26
HDAC4-207ENST00000461113 MTRRQ9UBK8 725 aa13.4□□□□□ -0.26
HDAC4-207ENST00000461113 NXF1Q9UBU9 619 aaKnown RBP13.4□□□□□ -0.26
HDAC4-207ENST00000461113 SIX4Q9UIU6 781 aa13.4□□□□□ -0.26
HDAC4-207ENST00000461113 NDRG2Q9UN36 371 aaKnown RBP13.4□□□□□ -0.26
HDAC4-207ENST00000461113 PTPRJQ12913 1337 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 TDRD15B5MCY1 1934 aaKnown RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 SYCE3A1L190 88 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 BECN2A8MW95 431 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 OAZ2O95190 189 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 STAU1O95793 577 aaKnown RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 CST3P01034 146 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 HLA-DRAP01903 254 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 CYP11A1P05108 521 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 FAM163BP0C2L3 166 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 CDK11BP21127 795 aaKnown RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 PCSK1P29120 753 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 OR1D2P34982 312 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 MARSP56192 900 aaKnown RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 ARPP19P56211 112 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 TSPY1Q01534 308 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 MYL5Q02045 173 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 SF3A2Q15428 464 aaKnown RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 LIN9Q5TKA1 542 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 ZNF687Q8N1G0 1237 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 FBXL13Q8NEE6 735 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 DNAJC25Q9H1X3 360 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 SNX25Q9H3E2 840 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 NFE2L3Q9Y4A8 694 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 TIMM13Q9Y5L4 95 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-207ENST00000461113 DOCK8Q8NF50 2099 aa13.39□□□□□ -0.27
HDAC4-207ENST00000461113 CHURC1-FNTBB4DL54 471 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 PES1O00541 588 aaKnown RBP13.38□□□□□ -0.27
HDAC4-207ENST00000461113 P4HA2O15460 535 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 KCNK5O95279 499 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 AFPP02771 609 aaKnown RBP13.38□□□□□ -0.27
HDAC4-207ENST00000461113 CPB1P15086 417 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 IGFBP6P24592 240 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-207ENST00000461113 FNTBP49356 437 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 CCR3P51677 355 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 PPP3CAQ08209 521 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 RAB33AQ14088 237 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 ANO6Q4KMQ2 910 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 WSCD1Q658N2 575 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 MAMSTRQ6ZN01 415 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 DCP1BQ8IZD4 617 aaKnown RBP13.38□□□□□ -0.27
HDAC4-207ENST00000461113 ADGRF2Q8IZF7 708 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 PLA2G2FQ9BZM2 168 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 VRTNQ9H8Y1 702 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 RXFP3Q9NSD7 469 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 RAB20Q9NX57 234 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 FBXL5Q9UKA1 691 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 MAFFQ9ULX9 164 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 POLIQ9UNA4 740 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 LHX6Q9UPM6 363 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 CDY1Q9Y6F8 540 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 MIA3Q5JRA6 1907 aa13.38□□□□□ -0.27
HDAC4-207ENST00000461113 SETXQ7Z333 2677 aaKnown RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 CNOT1A5YKK6 2376 aaKnown RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 SRRM3A6NNA2 597 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 PRRG1O14668 218 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 EEF1GP26641 437 aaKnown RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 GNL1P36915 607 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 FMO5P49326 533 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 MCCD1P59942 119 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 SATB1Q01826 763 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 RING1Q06587 406 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 KCNH2Q12809 1159 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 SMARCB1Q12824 385 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 MRPL58Q14197 206 aaKnown RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 CCDC6Q16204 474 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 ZSCAN23Q3MJ62 389 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 C1orf220Q5T0J3 134 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 TPGS2Q68CL5 300 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 TRIM59Q8IWR1 403 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 TMEM130Q8N3G9 435 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 PDCL2Q8N4E4 241 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 TTC39CQ8N584 583 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 FAM160A2Q8N612 972 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 C12orf50Q8NA57 414 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 OR6B3Q8NGW1 331 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 CXorf38Q8TB03 319 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 SLC35C1Q96A29 364 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 FAXDC2Q96IV6 333 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 FAM84AQ96KN4 292 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 CLSTN3Q9BQT9 956 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 GZF1Q9H116 711 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 LMAN1LQ9HAT1 526 aa13.37□□□□□ -0.27
HDAC4-207ENST00000461113 DDX43Q9NXZ2 648 aaKnown RBP13.37□□□□□ -0.27
HDAC4-207ENST00000461113 KCNJ18B7U540 433 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 PMM2O15305 246 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 CCL16O15467 120 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 ECI2O75521 394 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 ASS1P00966 412 aaKnown RBP13.36□□□□□ -0.27
HDAC4-207ENST00000461113 HNRNPA1P09651 372 aaKnown RBP eCLIP13.36□□□□□ -0.27
HDAC4-207ENST00000461113 CXCL12P48061 93 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 ZNF165P49910 485 aa13.36□□□□□ -0.27
HDAC4-207ENST00000461113 YWHAEP62258 255 aaKnown RBP13.36□□□□□ -0.27
HDAC4-207ENST00000461113 NOP14P78316 857 aaKnown RBP13.36□□□□□ -0.27
HDAC4-207ENST00000461113 KCNJ12Q14500 433 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms