RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CLIC6Q96NY7 704 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 MMS19Q96T76 1030 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 CBWD1Q9BRT8 395 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 ZSCAN16Q9H4T2 348 aaPredicted RBP14.23□□□□□ -0.13
HMGB3-204ENST00000448905 EBF1Q9UH73 591 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 CEP250Q9BV73 2442 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 PRPF6O94906 941 aaKnown RBP14.22□□□□□ -0.13
HMGB3-204ENST00000448905 GNL1P36915 607 aaPredicted RBP14.22□□□□□ -0.13
HMGB3-204ENST00000448905 DGKEP52429 567 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 CYP27A1Q02318 531 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 DMC1Q14565 340 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 SLC39A14Q15043 492 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 ST3GAL2Q16842 350 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 STPG1Q5TH74 334 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 PKMYT1Q99640 499 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 MTMR12Q9C0I1 747 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 SNX25Q9H3E2 840 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 INTS13Q9NVM9 706 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 ANGPTL2Q9UKU9 493 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 ARHGAP26Q9UNA1 814 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 WNT6Q9Y6F9 365 aa14.22□□□□□ -0.13
HMGB3-204ENST00000448905 COL4A2P08572 1712 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 SLC9A3R1O14745 358 aaPredicted RBP14.21□□□□□ -0.13
HMGB3-204ENST00000448905 TRIM66O15016 1216 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 CAVIN2O95810 425 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 PDGFRBP09619 1106 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 TCF3P15923 654 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 GBP1P32455 592 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 MPLP40238 635 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 CUL4AQ13619 759 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 ZNF77Q15935 545 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 CCDC6Q16204 474 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 EML3Q32P44 896 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 PLK5Q496M5 336 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 PLA2G2CQ5R387 149 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 DENND5BQ6ZUT9 1274 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 KIAA1958Q8N8K9 716 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 TSTD1Q8NFU3 115 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 CXorf38Q8TB03 319 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 HHIPQ96QV1 700 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 FNBP1Q96RU3 617 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 SYT15Q9BQS2 421 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 LINC00597Q9H2U6 94 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 GCNT4Q9P109 453 aa14.21□□□□□ -0.13
HMGB3-204ENST00000448905 PDCD11Q14690 1871 aaKnown RBP14.21□□□□□ -0.14
HMGB3-204ENST00000448905 FRMD3A2A2Y4 597 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 ATP2C2O75185 946 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 ALDH1A2O94788 518 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 ABL1P00519 1130 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 TNNI1P19237 187 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 SYT1P21579 422 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 BDNFP23560 247 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 LMO2P25791 158 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 CASP5P51878 434 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 WNT7BP56706 349 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 CREB5Q02930 508 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 DAB2IPQ5VWQ8 1189 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 TDRD10Q5VZ19 366 aaKnown RBP14.2□□□□□ -0.14
HMGB3-204ENST00000448905 RNF43Q68DV7 783 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 HS2ST1Q7LGA3 356 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 WDR49Q8IV35 697 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 PDILTQ8N807 584 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 STKLD1Q8NE28 680 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 ZSWIM2Q8NEG5 633 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 MYCBPAPQ8TBZ2 947 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 SLC22A12Q96S37 553 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 DUSP15Q9H1R2 295 aaPredicted RBP14.2□□□□□ -0.14
HMGB3-204ENST00000448905 CUEDC2Q9H467 287 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 SIX4Q9UIU6 781 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 MORC2Q9Y6X9 1032 aaPredicted RBP14.2□□□□□ -0.14
HMGB3-204ENST00000448905 CITO14578 2027 aa14.2□□□□□ -0.14
HMGB3-204ENST00000448905 NCOR2Q9Y618 2525 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 RALGAPA1Q6GYQ0 2036 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 C2orf78A6NCI8 922 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 TM4SF5O14894 197 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 WARSP23381 471 aaKnown RBP14.19□□□□□ -0.14
HMGB3-204ENST00000448905 SNRPFP62306 86 aaKnown RBP14.19□□□□□ -0.14
HMGB3-204ENST00000448905 USP4Q13107 963 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 C2orf27AQ580R0 203 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 N4BP2L1Q5TBK1 243 aaPredicted RBP14.19□□□□□ -0.14
HMGB3-204ENST00000448905 TRAPPC11Q7Z392 1133 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 LIMS2Q7Z4I7 341 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 OSTM1Q86WC4 334 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 DDX42Q86XP3 938 aaKnown RBP eCLIP14.19□□□□□ -0.14
HMGB3-204ENST00000448905 ADGRG2Q8IZP9 1017 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 RDH13Q8NBN7 331 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 OR6B3Q8NGW1 331 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 C8orf48Q96LL4 319 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 SLITRK1Q96PX8 696 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 LSM14BQ9BX40 385 aaKnown RBP14.19□□□□□ -0.14
HMGB3-204ENST00000448905 TNMDQ9H2S6 317 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 HSPBP1Q9NZL4 362 aa14.19□□□□□ -0.14
HMGB3-204ENST00000448905 BCLAF3A2AJT9 711 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 ZNF840PA6NDX5 716 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 LEFTY2O00292 366 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 KHNYNO15037 678 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 MAP3K13O43283 966 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 TADA3O75528 432 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 DLATP10515 647 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 PSMC1P62191 440 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms