RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 TDGF1P13385 188 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 AVPR1AP37288 418 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 DLG4P78352 724 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 PLCB2Q00722 1185 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 TRPC3Q13507 836 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 RALGPS2Q86X27 583 aaPredicted RBP22.17■■□□□ 1.14
SDC1-205ENST00000447124 SUMF1Q8NBK3 374 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 PCED1BQ96HM7 432 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 SNX25Q9H3E2 840 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 DPEP3Q9H4B8 488 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 HPS4Q9NQG7 708 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 UXTQ9UBK9 157 aaPredicted RBP22.17■■□□□ 1.14
SDC1-205ENST00000447124 NXF1Q9UBU9 619 aaKnown RBP22.17■■□□□ 1.14
SDC1-205ENST00000447124 NUP210Q8TEM1 1887 aaPredicted RBP22.17■■□□□ 1.14
SDC1-205ENST00000447124 PATJQ8NI35 1801 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 OTOL1A6NHN0 477 aaPredicted RBP22.16■■□□□ 1.14
SDC1-205ENST00000447124 PDXKO00764 312 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 VNN1O95497 513 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 MYL1P05976 194 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 PTPN1P18031 435 aaKnown RBP22.16■■□□□ 1.14
SDC1-205ENST00000447124 ATICP31939 592 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 CDH8P55286 799 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 USP46P62068 366 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 CYP27A1Q02318 531 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 DPYDQ12882 1025 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 MDH1BQ5I0G3 518 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 TRIM68Q6AZZ1 485 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 ZC3H14Q6PJT7 736 aaKnown RBP22.16■■□□□ 1.14
SDC1-205ENST00000447124 VSTM1Q6UX27 236 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 ZBTB44Q8NCP5 570 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 MSANTD3Q96H12 275 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 SPATA17Q96L03 361 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 GDPD2Q9HCC8 539 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 THG1LQ9NWX6 298 aaKnown RBP22.16■■□□□ 1.14
SDC1-205ENST00000447124 ZSCAN32Q9NX65 697 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 GCNT4Q9P109 453 aa22.16■■□□□ 1.14
SDC1-205ENST00000447124 A0A1W2PQ27 194 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 A0A1W2PQ64 194 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 A0A1W2PQD8 194 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 LILRB5O75023 590 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 PHACTR2O75167 634 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 NR3C1P04150 777 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 GRIK1P39086 918 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 CACNA2D1P54289 1103 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 TNNC1P63316 161 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 PON2Q15165 354 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 MAPRE1Q15691 268 aaKnown RBP22.15■■□□□ 1.14
SDC1-205ENST00000447124 ITPRIPL2Q3MIP1 535 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 C1orf220Q5T0J3 134 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 KRBA2Q6ZNG9 492 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 FSIP1Q8NA03 581 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 CHFRQ96EP1 664 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 SCAND2PQ9GZW5 306 aaPredicted RBP22.15■■□□□ 1.14
SDC1-205ENST00000447124 VRTNQ9H8Y1 702 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 TMEM30AQ9NV96 361 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 ZNF292O60281 2723 aa22.15■■□□□ 1.14
SDC1-205ENST00000447124 C2orf78A6NCI8 922 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 RHOBTB3O94955 611 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 BIRC3Q13489 604 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 RUNX3Q13761 415 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 ZNF268Q14587 947 aaPredicted RBP22.14■■□□□ 1.13
SDC1-205ENST00000447124 C1orf228Q6PIY5 440 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 DCLK2Q8N568 766 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 ARL14EPQ8N8R7 260 aaPredicted RBP22.14■■□□□ 1.13
SDC1-205ENST00000447124 SYAP1Q96A49 352 aaPredicted RBP22.14■■□□□ 1.13
SDC1-205ENST00000447124 B3GNT5Q9BYG0 378 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 SDCBP2Q9H190 292 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 EBF3Q9H4W6 596 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 SMYD3Q9H7B4 428 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 TRPC7Q9HCX4 862 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 TRAF3IP3Q9Y228 551 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 PCDHGA2Q9Y5H1 932 aa22.14■■□□□ 1.13
SDC1-205ENST00000447124 A8MXQ7 604 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 F8VP50 259 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 CLDN5O00501 218 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 KINO60870 393 aaKnown RBP22.13■■□□□ 1.13
SDC1-205ENST00000447124 ZNF202O95125 648 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 ARSAP15289 507 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 AP3M2P53677 418 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 SATB1Q01826 763 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 NCOA4Q13772 614 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 Q6ZS52 159 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 ATRIPQ8WXE1 791 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 ZNF518BQ9C0D4 1074 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 KIF9Q9HAQ2 790 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 C2orf42Q9NWW7 574 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 MAPK8IP1Q9UQF2 711 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 OBSL1O75147 1896 aa22.13■■□□□ 1.13
SDC1-205ENST00000447124 ZNF638Q14966 1978 aaKnown RBP22.12■■□□□ 1.13
SDC1-205ENST00000447124 GREB1Q4ZG55 1949 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 HOXC13P31276 330 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 RAP1GAPP47736 663 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 FAM160A1Q05DH4 1040 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 ZACNQ401N2 412 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 DGKKQ5KSL6 1271 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 CEP135Q66GS9 1140 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 DENND5BQ6ZUT9 1274 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 SV2AQ7L0J3 742 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 SPEM1Q8N4L4 309 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 TMC2Q8TDI7 906 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms