RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 SLC8A3P57103 927 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 DUSP4Q13115 394 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 DUSP6Q16828 381 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC142Q17RM4 750 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 GOLGA7BQ2TAP0 167 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 ASTE1Q2TB18 679 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 TDRD12Q587J7 1177 aaKnown RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 FAM35AQ86V20 835 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 TTC30AQ86WT1 665 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 LRRC8AQ8IWT6 810 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 SLC30A5Q8TAD4 765 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 SLC22A17Q8WUG5 538 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 SLC20A1Q8WUM9 679 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 SLC35F5Q8WV83 523 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 C8orf48Q96LL4 319 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CEP295NLQ96MC4 621 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 PGLYRP2Q96PD5 576 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 BAG1Q99933 345 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 PRDM12Q9H4Q4 367 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 NSUN3Q9H649 340 aaKnown RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 NHEJ1Q9H9Q4 299 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 ABI2Q9NYB9 513 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 TRIM66O15016 1216 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 AP1G2O75843 785 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CSPG5O95196 566 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 SEC24AO95486 1093 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 GLUD1P00367 558 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-204ENST00000434233 UNGP13051 313 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-204ENST00000434233 NPR3P17342 541 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 GRIK1P39086 918 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 PDE4CQ08493 712 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 BST2Q10589 180 aaKnown RBP13.03□□□□□ -0.32
LINC00339-204ENST00000434233 PPP1R2P3Q6NXS1 205 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 DENND1BQ6P3S1 775 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CLEC20AQ6ZU45 233 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC149Q6ZUS6 474 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 ADGRD2Q7Z7M1 963 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC170Q8IYT3 715 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 WDTC1Q8N5D0 677 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 TMEM35BQ8NCS4 154 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 KREMEN2Q8NCW0 462 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC112Q8NEF3 446 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 OLIG1Q8TAK6 271 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 STK32AQ8WU08 396 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 HSFY1Q96LI6 401 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC42Q96M95 316 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 PCDHB18PQ96TA0 734 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 SMOQ99835 787 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 PLEKHA4Q9H4M7 779 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CYP4F11Q9HBI6 524 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 ADAMTS1Q9UHI8 967 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 SLC27A5Q9Y2P5 690 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 CEP83Q9Y592 693 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
LINC00339-204ENST00000434233 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.32
LINC00339-204ENST00000434233 PLXNA3P51805 1871 aa13.02□□□□□ -0.32
LINC00339-204ENST00000434233 M0QYV0 167 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 DDX3XO00571 662 aaKnown RBP eCLIP13.02□□□□□ -0.332e-7■■□□□ 13.2
LINC00339-204ENST00000434233 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 PER2O15055 1255 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 BEST1O76090 585 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 LSM8O95777 96 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 PTMAP06454 111 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 SSTR3P32745 418 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 RPL34P49207 117 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 MAP3K7CLP57077 242 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 RPL10AP62906 217 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 KCNC3Q14003 757 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 CLEC16AQ2KHT3 1053 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 MGAT5BQ3V5L5 792 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 RBM23Q86U06 439 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 TMEM139Q8IV31 216 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 KCTD13Q8WZ19 329 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 SECISBP2LQ93073 1101 aaKnown RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 SPATA17Q96L03 361 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 KCNK16Q96T55 309 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 CRISPLD1Q9H336 500 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 DEF6Q9H4E7 631 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 PNPLA8Q9NP80 782 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 DMAP1Q9NPF5 467 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-204ENST00000434233 CYLDQ9NQC7 956 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 KRT82Q9NSB4 513 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
LINC00339-204ENST00000434233 NRDCO43847 1150 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 AKR1B10O60218 316 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 RTN2O75298 545 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 SPATA31D3P0C874 917 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 CYLC1P35663 651 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-204ENST00000434233 ACADSBP45954 432 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 PLA2G4AP47712 749 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 ALDH1A3P47895 512 aa13.01□□□□□ -0.33
LINC00339-204ENST00000434233 NRIP1P48552 1158 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms