RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MYL1P05976 194 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 CSF1RP07333 972 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 KCNA3P22001 575 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 GRIA3P42263 894 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 PIK3CBP42338 1070 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 RARRES1P49788 294 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 MAPK10P53779 464 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 SIM1P81133 766 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 INSCQ1MX18 579 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 ERCC6LQ2NKX8 1250 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 PRR16Q569H4 304 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 ZDHHC24Q6UX98 284 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 KSR2Q6VAB6 950 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 RFKQ969G6 155 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 PPP1R9BQ96SB3 815 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 CHST8Q9H2A9 424 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 DHX36Q9H2U1 1008 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 MRPS17Q9Y2R5 130 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 LOC102723971A0A1B0GUV8 181 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 PMM2O15305 246 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 SLC16A3O15427 465 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 ORC4O43929 436 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 TXNP10599 105 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 IL1R1P14778 569 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 CXCR5P32302 372 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 PLA2G5P39877 138 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 PDE6CP51160 858 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 BMPR2Q13873 1038 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 TBCCQ15814 346 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 PEG10Q86TG7 708 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 SLC15A3Q8IY34 581 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 BPIFB1Q8TDL5 484 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 ATRIPQ8WXE1 791 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 ATG4AQ8WYN0 398 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 ZC3H10Q96K80 434 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 BRIP1Q9BX63 1249 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 STK31Q9BXU1 1019 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 SYNPO2LQ9H987 977 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 SNX13Q9Y5W8 968 aa6.89□□□□□ -1.31
CCDC88A-206ENST00000430086 F8W8V4 182 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 RASSF9O75901 435 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 NXPH3O95157 252 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 IL18RAPO95256 599 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 PDHA1P08559 390 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 CASP5P51878 434 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 HTRA4P83105 476 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 ZNF543Q08ER8 600 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 DAG1Q14118 895 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 ZNF618Q5T7W0 954 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 CAGE1Q8TC20 777 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 NAA15Q9BXJ9 866 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 PNPLA8Q9NP80 782 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 CORO2BQ9UQ03 480 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 SH2B3Q9UQQ2 575 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 CDY1Q9Y6F8 540 aa6.88□□□□□ -1.31
CCDC88A-206ENST00000430086 MT-ND5P03915 603 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 ATXN1P54253 815 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 SP2Q02086 613 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 IFIT5Q13325 482 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 ARHGEF7Q14155 803 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 NPY5RQ15761 445 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 MAVSQ7Z434 540 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 YAF2Q8IY57 180 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 SDR16C5Q8N3Y7 309 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 SIMC1Q8NDZ2 872 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 IPCEF1Q8WWN9 437 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 PPP2R3CQ969Q6 453 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 SNX22Q96L94 193 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 DNMT3BQ9UBC3 853 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 DKK3Q9UBP4 350 aa6.87□□□□□ -1.31
CCDC88A-206ENST00000430086 URI1O94763 535 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 ONECUT2O95948 504 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 ZFXP17010 805 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 ACVR2AP27037 513 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 CARSP49589 748 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 PRKAG1P54619 331 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 EIF2B5Q13144 721 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 SLC29A2Q14542 456 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 PLAC9Q5JTB6 97 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 UNC13DQ70J99 1090 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 TRIM5Q9C035 493 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 SERTAD4Q9NUC0 356 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 TRMT13Q9NUP7 481 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 HDAC9Q9UKV0 1011 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 TBC1D30Q9Y2I9 924 aa6.86□□□□□ -1.31
CCDC88A-206ENST00000430086 MGST3O14880 152 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 INMTO95050 263 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 ANXA2P07355 339 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 PARP1P09874 1014 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 NBPF7P0C2Y1 421 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 ELFN1P0C7U0 828 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 NR2F6P10588 404 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 BTF3P20290 206 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 PCSK6P29122 969 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 TM4SF4P48230 202 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 PRIM2P49643 509 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 CACNA2D1P54289 1103 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 KRTAP15-1Q3LI76 137 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 FCRL6Q6DN72 434 aa6.85□□□□□ -1.31
CCDC88A-206ENST00000430086 ZNF551Q7Z340 670 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms