RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 BDNFP23560 247 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 CYP27A1Q02318 531 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 CUL4BQ13620 913 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 RUNX3Q13761 415 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 PSMD6Q15008 389 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 RESP18Q5W5W9 173 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 FAM171BQ6P995 826 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 DPH6Q7L8W6 267 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 LIMS2Q7Z4I7 341 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 XXYLT1Q8NBI6 393 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 SLC22A12Q96S37 553 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 MAGEC2Q9UBF1 373 aaPredicted RBP18.27■□□□□ 0.52
TRIM39-209ENST00000428728 USP18Q9UMW8 372 aa18.27■□□□□ 0.52
TRIM39-209ENST00000428728 TRAV19A0A0A6YYK7 116 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 K7ESF4 209 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 CLSTN1O94985 981 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 HOXC13P31276 330 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MAGEA11P43364 429 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 SRSF5Q13243 272 aaKnown RBP18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MTF1Q14872 753 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MDH1BQ5I0G3 518 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 CHFRQ96EP1 664 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MYRFLQ96LU7 910 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 CYP2S1Q96SQ9 504 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MRPL45Q9BRJ2 306 aaKnown RBP18.26■□□□□ 0.51
TRIM39-209ENST00000428728 SNX25Q9H3E2 840 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 FRYLO94915 3013 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 MYOFQ9NZM1 2061 aa18.26■□□□□ 0.51
TRIM39-209ENST00000428728 C2orf78A6NCI8 922 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 CST3P01034 146 aaPredicted RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 USP17L7P0C7H9 530 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 ANXA13P27216 316 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 GRIK1P39086 918 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 TNNC1P63316 161 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 DNM1Q05193 864 aaKnown RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 FAM160A1Q05DH4 1040 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 USP4Q13107 963 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 SIM2Q14190 667 aaPredicted RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 ZNF268Q14587 947 aaPredicted RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 KCNB1Q14721 858 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 MAPRE1Q15691 268 aaKnown RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 ZNF77Q15935 545 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 RSPO4Q2I0M5 234 aaPredicted RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 FSTL4Q6MZW2 842 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 PKN3Q6P5Z2 889 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 DGLUCYQ7Z3D6 616 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 CEP57L1Q8IYX8 460 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 ARL14EPQ8N8R7 260 aaPredicted RBP18.25■□□□□ 0.51
TRIM39-209ENST00000428728 FSIP1Q8NA03 581 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 PCED1BQ96HM7 432 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 SERTAD1Q9UHV2 236 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 NME7Q9Y5B8 376 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 WNT6Q9Y6F9 365 aa18.25■□□□□ 0.51
TRIM39-209ENST00000428728 SOBPA7XYQ1 873 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 PAPSS2O95340 614 aaPredicted RBP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 IFNAR2P48551 515 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 CASP4P49662 377 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 SNRPFP62306 86 aaKnown RBP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 GRSF1Q12849 480 aaKnown RBP eCLIP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 TRPC3Q13507 836 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 PUM1Q14671 1186 aaKnown RBP eCLIP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 PDGFRLQ15198 375 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 BMT2Q1RMZ1 405 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 WDR72Q3MJ13 1102 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 TMEM196Q5HYL7 178 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 NAIF1Q69YI7 327 aaPredicted RBP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 LAIR1Q6GTX8 287 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 VSTM1Q6UX27 236 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 SYNPOQ8N3V7 929 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 CPA6Q8N4T0 437 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 OR6B3Q8NGW1 331 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 GZF1Q9H116 711 aaPredicted RBP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 PARD6AQ9NPB6 346 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 NXF1Q9UBU9 619 aaKnown RBP18.24■□□□□ 0.51
TRIM39-209ENST00000428728 WDR87Q6ZQQ6 2873 aa18.24■□□□□ 0.51
TRIM39-209ENST00000428728 PVALEFA0A1B0GWK0 134 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 EXOC3O60645 756 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 PHACTR2O75167 634 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 EGFP01133 1207 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 PDIA4P13667 645 aaKnown RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 GNL1P36915 607 aaPredicted RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 MYL6P60660 151 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 USP46P62068 366 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 SPEM2Q0P670 501 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 KNOP1Q1ED39 458 aaKnown RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 ATL3Q6DD88 541 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 LONP2Q86WA8 852 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 GPR161Q8N6U8 529 aaKnown RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 MYCBPAPQ8TBZ2 947 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 SH3RF2Q8TEC5 729 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 ZNF516Q92618 1163 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 SPATA17Q96L03 361 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 DPEP3Q9H4B8 488 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 EXOC1Q9NV70 894 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 DUS2Q9NX74 493 aaKnown RBP18.23■□□□□ 0.51
TRIM39-209ENST00000428728 GCNT4Q9P109 453 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 CFAP45Q9UL16 551 aa18.23■□□□□ 0.51
TRIM39-209ENST00000428728 F8VP50 259 aa18.22■□□□□ 0.51
TRIM39-209ENST00000428728 TRIM66O15016 1216 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms