RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CCT6AP40227 531 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MLLT10P55197 1068 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SNX16P57768 344 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SPAG1Q07617 926 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PPP2R5CQ13362 524 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TAF13Q15543 124 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 GRIK5Q16478 980 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DCAF12Q5T6F0 453 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MAP3K21Q5TCX8 1036 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 IYDQ6PHW0 289 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 KLHL24Q6TFL4 600 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SCIMPQ6UWF3 145 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKS3Q6ZW76 656 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 KBTBD6Q86V97 674 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 NAGSQ8N159 534 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EHBP1Q8NDI1 1231 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CMASQ8NFW8 434 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 NPLOC4Q8TAT6 608 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 EPS8L3Q8TE67 593 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SH3KBP1Q96B97 665 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PTERQ96BW5 349 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 POM121Q96HA1 1249 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 SENP7Q9BQF6 1050 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CPEB1Q9BZB8 566 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 OSGEPL1Q9H4B0 414 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CXorf56Q9H5V9 222 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CPNE5Q9HCH3 593 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 BABAM1Q9NWV8 329 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGEF38Q9NXL2 777 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PALD1Q9ULE6 856 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PLAGL2Q9UPG8 496 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHGB5Q9Y5G0 923 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 VPS8Q8N3P4 1428 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM170AA1A519 330 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM43BA6NCK2 446 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 UBA1P22314 1058 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 OR1D2P34982 312 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 POLD2P49005 469 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ANAPC15P60006 121 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ATP11AP98196 1134 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ILF3Q12906 894 aaKnown RBP eCLIP2.91□□□□□ -1.941e-7■■□□□ 13
CCDC88A-205ENST00000426576 BAATQ14032 418 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SEPT2Q15019 361 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SNRNP35Q16560 246 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ATP13A4Q4VNC1 1196 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FKBP1CQ5VVH2 108 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GAREM2Q75VX8 874 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SND1Q7KZF4 910 aaKnown RBP eCLIP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RAB44Q7Z6P3 723 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TTC39CQ8N584 583 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TOR1AIP2Q8NFQ8 470 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RPLP0P6Q8NHW5 317 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 HELQQ8TDG4 1101 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FAR1Q8WVX9 515 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM43Q96BQ3 446 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PPP1R16AQ96I34 528 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TMX3Q96JJ7 454 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FER1L6-AS2Q96M78 137 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 AGAP2Q99490 1192 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC39A1Q9NY26 324 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CNOT8Q9UFF9 292 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SUN2Q9UH99 717 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF451Q9Y4E5 1061 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CDY2AQ9Y6F7 541 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGAP31Q2M1Z3 1444 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SLIT2O94813 1529 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 A0A1W2PQD8 194 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 E9PQ18 207 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 HUS1O60921 280 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ERBB2P04626 1255 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC2A4P14672 509 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 HDCP19113 662 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GTF2E2P29084 291 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GRIK1P39086 918 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 UBA7P41226 1012 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RBM10P98175 930 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RBL2Q08999 1139 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CDH18Q13634 790 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 XKR4Q5GH76 650 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM211Q6ICI0 200 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM65Q6PJ69 517 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DNASE1L2Q92874 299 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 BBS4Q96RK4 519 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RHNO1Q9BSD3 238 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 BBS2Q9BXC9 721 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 C22orf23Q9BZE7 217 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GLT8D2Q9H1C3 349 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 POMKQ9H5K3 350 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 RSAD1Q9HA92 442 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SMPD4Q9NXE4 827 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 LRFN1Q9P244 771 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 NOP58Q9Y2X3 529 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHGB7Q9Y5F8 929 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PCNTO95613 3336 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CENPFP49454 3210 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ZBED9Q6R2W3 1325 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 LCE2BO14633 110 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms