RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FAM26FQ5R3K3 315 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 C1orf228Q6PIY5 440 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 TRAPPC11Q7Z392 1133 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 SH3RF2Q8TEC5 729 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 EZH1Q92800 747 aaPredicted RBP12.38□□□□□ -0.43
USP4-204ENST00000416417 ZNF396Q96N95 335 aaPredicted RBP12.38□□□□□ -0.43
USP4-204ENST00000416417 HHIPQ96QV1 700 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 DPEP3Q9H4B8 488 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 SLC39A2Q9NP94 309 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 SEMA4GQ9NTN9 838 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 DUS2Q9NX74 493 aaKnown RBP12.38□□□□□ -0.43
USP4-204ENST00000416417 GCNT4Q9P109 453 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 MAGEC2Q9UBF1 373 aaPredicted RBP12.38□□□□□ -0.43
USP4-204ENST00000416417 CEP250Q9BV73 2442 aa12.38□□□□□ -0.43
USP4-204ENST00000416417 TRAV19A0A0A6YYK7 116 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 TRDMT1O14717 391 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 POLR2DO15514 142 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 CUTAO60888 179 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PPP6R2O75170 966 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PAPSS2O95340 614 aaPredicted RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 RETP07949 1114 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 USP17L7P0C7H9 530 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 TNNI1P19237 187 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 GRIK1P39086 918 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 AFMP43652 599 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 CASP4P49662 377 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 ZXDBP98169 803 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 FAM160A1Q05DH4 1040 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 USP4Q13107 963 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PKP1Q13835 747 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 SNRNP35Q16560 246 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 STXBP4Q6ZWJ1 553 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 LIMS2Q7Z4I7 341 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 WDR5BQ86VZ2 330 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 WDR49Q8IV35 697 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 GPR161Q8N6U8 529 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 ZNF507Q8TCN5 953 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 SCFD1Q8WVM8 642 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 ZNF516Q92618 1163 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 TRMT2BQ96GJ1 504 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 MYRFLQ96LU7 910 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 GZF1Q9H116 711 aaPredicted RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 SMOC1Q9H4F8 434 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 ECT2Q9H8V3 914 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 KIF9Q9HAQ2 790 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 TMEM30AQ9NV96 361 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 UXTQ9UBK9 157 aaPredicted RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 CDH9Q9ULB4 789 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 CLDN5O00501 218 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 ABL1P00519 1130 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 HDCP19113 662 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 KCNA4P22459 653 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 WARSP23381 471 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 IFNAR2P48551 515 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 MYL6P60660 151 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 CYP24A1Q07973 514 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 IFRD2Q12894 506 aaPredicted RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 PSMD2Q13200 908 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 CUL4BQ13620 913 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PDGFRLQ15198 375 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 SF3A2Q15428 464 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 DENND4CQ5VZ89 1909 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 C4orf50Q6ZRC1 276 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 HS2ST1Q7LGA3 356 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 KBTBD6Q86V97 674 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 SYNPOQ8N3V7 929 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 IQUBQ8NA54 791 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 OR6B3Q8NGW1 331 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 RPLP0P6Q8NHW5 317 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PLEKHO2Q8TD55 490 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 OSCP1Q8WVF1 389 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PCED1BQ96HM7 432 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 FUBP3Q96I24 572 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP4-204ENST00000416417 CHAMP1Q96JM3 812 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 CGRRF1Q99675 332 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 P2RY13Q9BPV8 354 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 C7orf25Q9BPX7 421 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 ARRDC1-AS1Q9H2J1 176 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 SNX25Q9H3E2 840 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 NXF1Q9UBU9 619 aaKnown RBP12.37□□□□□ -0.43
USP4-204ENST00000416417 SLC8A2Q9UPR5 921 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 INVSQ9Y283 1065 aa12.37□□□□□ -0.43
USP4-204ENST00000416417 PRR5-ARHGAP8B1AHC4 643 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 F8VP50 259 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 DCLK1O15075 740 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 KIAA0391O15091 583 aaKnown RBP12.36□□□□□ -0.43
USP4-204ENST00000416417 EIF3DO15371 548 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP4-204ENST00000416417 YEATS4O95619 227 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 GNL1P36915 607 aaPredicted RBP12.36□□□□□ -0.43
USP4-204ENST00000416417 MAGEA11P43364 429 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 RAP1GAPP47736 663 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 CDH8P55286 799 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 SEC13P55735 322 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 ARHGAP8P85298 464 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 AMPD3Q01432 767 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 ZNF268Q14587 947 aaPredicted RBP12.36□□□□□ -0.43
USP4-204ENST00000416417 KCNB1Q14721 858 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 PSMD6Q15008 389 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 SURF1Q15526 300 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 EML3Q32P44 896 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms