RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 FAM71AQ8IYT1 594 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 FAM71BQ8TC56 605 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 SKA2Q8WVK7 121 aaPredicted RBP9.52□□□□□ -0.89
LIG4-202ENST00000405925 ARHGEF26Q96DR7 871 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 TRPV6Q9H1D0 765 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 TAS2R14Q9NYV8 317 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 SMIM28A0A1B0GU29 152 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 E5RJQ4 531 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 B4GALT4O60513 344 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 APRTP07741 180 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 ARHGAP25P42331 645 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 SETDB1Q15047 1291 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 SMC6Q96SB8 1091 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 RAB6BQ9NRW1 208 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 TUBGCP4Q9UGJ1 667 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 PCDHB5Q9Y5E4 795 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.52□□□□□ -0.89
LIG4-202ENST00000405925 ADGRA3Q8IWK6 1321 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 CACNA1SQ13698 1873 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 LGR5O75473 907 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 NNMTP40261 264 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SLC39A12Q504Y0 691 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ITPRIPL1Q6GPH6 555 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 DENND1BQ6P3S1 775 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 CCDC121Q6ZUS5 278 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 PCGF5Q86SE9 256 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 LRRC15Q8TF66 581 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ATG4AQ8WYN0 398 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 CCT6BQ92526 530 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 BFARQ9NZS9 450 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ADAMTS5Q9UNA0 930 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 MOXD2PA6NHM9 499 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 NT5C1B-RDH14C9J2C7 533 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SOCS7O14512 581 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 CST3P01034 146 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 CYBBP04839 570 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SELPP16109 830 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ADSSP30520 456 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 BRCC3P46736 316 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 HARS2P49590 506 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 GNGT1P63211 74 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 EFEMP1Q12805 493 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 PDIA2Q13087 525 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 BIRC2Q13490 618 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 KDELC2Q7Z4H8 507 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 NECAB2Q7Z6G3 386 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 GDAP1Q8TB36 358 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 IFT43Q96FT9 208 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SNF8Q96H20 258 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 DMAP1Q9NPF5 467 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 NOVA2Q9UNW9 492 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 GIT1Q9Y2X7 761 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SH3BP1Q9Y3L3 701 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 A0A0A6YYK5 440 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 RAD51CO43502 376 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 RNF40O75150 1001 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 PTPN1P18031 435 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 CCND3P30281 292 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 MAP2K2P36507 400 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 NUMBP49757 651 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 CAV1Q03135 178 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 TTC19Q6DKK2 380 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 ZBED8Q8IZ13 594 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 TMEM86AQ8N2M4 240 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ARHGAP18Q8N392 663 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ATPAF2Q8N5M1 289 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 GANCQ8TET4 914 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SMARCD1Q96GM5 515 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 KREMEN1Q96MU8 473 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 RPRD1AQ96P16 312 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 DDX50Q9BQ39 737 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 CHST12Q9NRB3 414 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 FBXL5Q9UKA1 691 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 PLAAQ9Y263 795 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 A6NNZ2 444 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 FBXO21O94952 628 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 MT-ND3P03897 115 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 PMLP29590 882 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 SESN2P58004 480 aaPredicted RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 NFIL3Q16649 462 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 TUBB8Q3ZCM7 444 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 LRRC8DQ7L1W4 858 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 UNC93AQ86WB7 457 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 JAMLQ86YT9 394 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 TMEM199Q8N511 208 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 LRRC52Q8N7C0 313 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 MRPS31Q92665 395 aaKnown RBP9.51□□□□□ -0.89
LIG4-202ENST00000405925 FZD8Q9H461 694 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 TRPM5Q9NZQ8 1165 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 USP18Q9UMW8 372 aa9.51□□□□□ -0.89
LIG4-202ENST00000405925 ATP8B1O43520 1251 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 PSTPIP1O43586 416 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 F2P00734 622 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 EDNRBP24530 442 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 PBX1P40424 430 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 PDCLQ13371 301 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 IL31Q6EBC2 164 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 DDX42Q86XP3 938 aaKnown RBP eCLIP9.5□□□□□ -0.89
LIG4-202ENST00000405925 CCDC33Q8N5R6 958 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 C12orf29Q8N999 325 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms