RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 GPD2P43304 727 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 CLCN4P51793 760 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 BCAT1P54687 386 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 SLC8A3P57103 927 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 DUSP4Q13115 394 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 DUSP6Q16828 381 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 CCDC142Q17RM4 750 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 GOLGA7BQ2TAP0 167 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 ASTE1Q2TB18 679 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 TDRD12Q587J7 1177 aaKnown RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 FAM35AQ86V20 835 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 TTC30AQ86WT1 665 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 LRRC8AQ8IWT6 810 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 SLC30A5Q8TAD4 765 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 SLC22A17Q8WUG5 538 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 SLC20A1Q8WUM9 679 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 SLC35F5Q8WV83 523 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 C8orf48Q96LL4 319 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 CEP295NLQ96MC4 621 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 PGLYRP2Q96PD5 576 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 BAG1Q99933 345 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 PRDM12Q9H4Q4 367 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 NSUN3Q9H649 340 aaKnown RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 NHEJ1Q9H9Q4 299 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 ABI2Q9NYB9 513 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-201ENST00000404210 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
LINC00339-201ENST00000404210 TRIM66O15016 1216 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 AP1G2O75843 785 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CSPG5O95196 566 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 SEC24AO95486 1093 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 GLUD1P00367 558 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-201ENST00000404210 UNGP13051 313 aaPredicted RBP13.03□□□□□ -0.32
LINC00339-201ENST00000404210 NPR3P17342 541 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 GRIK1P39086 918 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 PDE4CQ08493 712 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 BST2Q10589 180 aaKnown RBP13.03□□□□□ -0.32
LINC00339-201ENST00000404210 PPP1R2P3Q6NXS1 205 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 DENND1BQ6P3S1 775 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CLEC20AQ6ZU45 233 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CCDC149Q6ZUS6 474 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 ADGRD2Q7Z7M1 963 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CCDC170Q8IYT3 715 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 WDTC1Q8N5D0 677 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 TMEM35BQ8NCS4 154 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 KREMEN2Q8NCW0 462 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CCDC112Q8NEF3 446 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 OLIG1Q8TAK6 271 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 STK32AQ8WU08 396 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 HSFY1Q96LI6 401 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CCDC42Q96M95 316 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 PCDHB18PQ96TA0 734 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 SMOQ99835 787 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 PLEKHA4Q9H4M7 779 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CYP4F11Q9HBI6 524 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 ADAMTS1Q9UHI8 967 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 FBXW11Q9UKB1 542 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 SLC27A5Q9Y2P5 690 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 CEP83Q9Y592 693 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
LINC00339-201ENST00000404210 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.32
LINC00339-201ENST00000404210 PLXNA3P51805 1871 aa13.02□□□□□ -0.32
LINC00339-201ENST00000404210 M0QYV0 167 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 DDX3XO00571 662 aaKnown RBP eCLIP13.02□□□□□ -0.332e-7■■□□□ 13.2
LINC00339-201ENST00000404210 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 PER2O15055 1255 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 BEST1O76090 585 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 LSM8O95777 96 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 PTMAP06454 111 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 SSTR3P32745 418 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 RPL34P49207 117 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 MAP3K7CLP57077 242 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 RPL10AP62906 217 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 KCNC3Q14003 757 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 CLEC16AQ2KHT3 1053 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 MGAT5BQ3V5L5 792 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 RBM23Q86U06 439 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 TMEM139Q8IV31 216 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 KCTD13Q8WZ19 329 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 SECISBP2LQ93073 1101 aaKnown RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 SPATA17Q96L03 361 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 KCNK16Q96T55 309 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 CRISPLD1Q9H336 500 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 DEF6Q9H4E7 631 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 PNPLA8Q9NP80 782 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 DMAP1Q9NPF5 467 aaPredicted RBP13.02□□□□□ -0.33
LINC00339-201ENST00000404210 CYLDQ9NQC7 956 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 KRT82Q9NSB4 513 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
LINC00339-201ENST00000404210 NRDCO43847 1150 aa13.01□□□□□ -0.33
LINC00339-201ENST00000404210 AKR1B10O60218 316 aa13.01□□□□□ -0.33
LINC00339-201ENST00000404210 RTN2O75298 545 aa13.01□□□□□ -0.33
LINC00339-201ENST00000404210 SPATA31D3P0C874 917 aa13.01□□□□□ -0.33
LINC00339-201ENST00000404210 CYLC1P35663 651 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-201ENST00000404210 ACADSBP45954 432 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms