RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 IGFBP6P24592 240 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 RABGGTBP53611 331 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 CRHR2Q13324 411 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 CYP1B1Q16678 543 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 NDRG1Q92597 394 aaKnown RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 KCNN1Q92952 543 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 CWC15Q9P013 229 aaKnown RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 CALCOCO1Q9P1Z2 691 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 PCDHGC3Q9UN70 934 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 GNEQ9Y223 722 aaKnown RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 HTTP42858 3142 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 PAEPP09466 180 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 CYP3A5P20815 502 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 GRM5P41594 1212 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 CDH6P55285 790 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 POU5F1BQ06416 359 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 CCNG2Q16589 344 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 TFDP3Q5H9I0 405 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 ARFGAP1Q8N6T3 406 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 ART4Q93070 314 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 C2CD2Q9Y426 696 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 HEY1Q9Y5J3 304 aa11.71□□□□□ -0.54
TCOF1-203ENST00000394269 C17orf102A2RUQ5 167 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RASGRF2O14827 1237 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 F2P00734 622 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 ATICP31939 592 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 IFNAR2P48551 515 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CPT1AP50416 773 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CNGA2Q16280 664 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 PAN2Q504Q3 1202 aaKnown RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 C1orf228Q6PIY5 440 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 FAM183BPQ6ZVS7 135 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CCDC89Q8N998 374 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 EIF1ADQ8N9N8 165 aaKnown RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 ACTL9Q8TC94 416 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 FAM149B1Q96BN6 582 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 USP18Q9UMW8 372 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 SMIM28A0A1B0GU29 152 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 GNL1P36915 607 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RGS2P41220 211 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 DRG2P55039 364 aaKnown RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 OTUD4Q01804 1114 aaKnown RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 KLF1Q13351 362 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 SLMAPQ14BN4 828 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CHADLQ6NUI6 762 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RGMBQ6NW40 437 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 LRIG3Q6UXM1 1119 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RASAL3Q86YV0 1011 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CXorf38Q8TB03 319 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CLEC4CQ8WTT0 213 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 LPPQ93052 612 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 SNX25Q9H3E2 840 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 KCNK9Q9NPC2 374 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CTNNAL1Q9UBT7 734 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 COL1A2P08123 1366 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 EIF3HO15372 352 aaKnown RBP eCLIP11.7□□□□□ -0.545e-6■■■□□ 14.9
TCOF1-203ENST00000394269 RIPK2O43353 540 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 ITIH2P19823 946 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 LSP1P33241 339 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 AFF1P51825 1210 aaKnown RBP11.7□□□□□ -0.54
TCOF1-203ENST00000394269 DCAF4L1Q3SXM0 396 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 MORN1Q5T089 497 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 PPP1R2P3Q6NXS1 205 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 NPNTQ6UXI9 565 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 HOOK3Q86VS8 718 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RSAD2Q8WXG1 361 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 RUNDC3BQ96NL0 473 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 CYP3A43Q9HB55 503 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
TCOF1-203ENST00000394269 PRPSAP2O60256 369 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ATP2C2O75185 946 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 BANF1O75531 89 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 TRIM32Q13049 653 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 KRT81Q14533 505 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 APBB1IPQ7Z5R6 666 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SAPCD2Q86UD0 394 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 IFNL1Q8IU54 200 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 CD302Q8IX05 232 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 NETO2Q8NC67 525 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 TRAIPQ9BWF2 469 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 LHX5Q9H2C1 402 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ZFYVE28Q9HCC9 887 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SAYSD1Q9NPB0 183 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SPTLC1O15269 473 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 LIASO43766 372 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 HMGCRP04035 888 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 RARGP13631 454 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 MDH1P40925 334 aaKnown RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ATXN1P54253 815 aaKnown RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SOWAHAQ2M3V2 549 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 FBXO47Q5MNV8 452 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 TTC30AQ86WT1 665 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 IFNLR1Q8IU57 520 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ANKMY2Q8IV38 441 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 FAM71DQ8N9W8 422 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 RBM15Q96T37 977 aaKnown RBP eCLIP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms