RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PDIA5Q14554 519 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 FAM83EQ2M2I3 478 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 DGKKQ5KSL6 1271 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RPAP3Q9H6T3 665 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 EPB41L4AQ9HCS5 686 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 A0A087X0T9 212 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 SUPT7LO94864 414 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 FAM228BP0C875 321 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 TRAF3Q13114 568 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ACCSLQ4AC99 568 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 DENND1BQ6P3S1 775 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 EFL1Q7Z2Z2 1120 aaKnown RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 KYQ8NBH2 561 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RWDD3Q9Y3V2 267 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PPEF1O14829 653 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 POU4F1Q01851 419 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ALDH6A1Q02252 535 aaKnown RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 GALNTL6Q49A17 601 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 TTC39CQ8N584 583 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 TDRD5Q8NAT2 981 aaKnown RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RORBQ92753 470 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PPP1R14BQ96C90 147 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PAFAH2Q99487 392 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 REEP2Q9BRK0 252 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 SERHL2Q9H4I8 314 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 SERHLQ9NQF3 203 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ABCA5Q8WWZ7 1642 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CLASP1Q7Z460 1538 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PCP4L1A6NKN8 68 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PTGES3LE9PB15 166 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RAD51BO15315 384 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 TM9SF1O15321 606 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ZFP42Q96MM3 310 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 QKIQ96PU8 341 aaKnown RBP eCLIP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CHID1Q9BWS9 393 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 DBNDD1Q9H9R9 158 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 NFKBIL1Q9UBC1 381 aaPredicted RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 NAALADL1Q9UQQ1 740 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 PNMA8CA0A1B0GUJ8 204 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CENPXA8MT69 81 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 AP5Z1O43299 807 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 NT5C2P49902 561 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 NR1D2Q14995 579 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CYP51A1Q16850 503 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 KCNT1Q5JUK3 1230 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ATG16L2Q8NAA4 619 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 KLHL23Q8NBE8 558 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ACTRT1Q8TDG2 376 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 ATXN2LQ8WWM7 1075 aaKnown RBP12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RNFT2Q96EX2 444 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 DNAJC7Q99615 494 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RNPEPL1Q9HAU8 725 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 CLIC5Q9NZA1 410 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 RAB21Q9UL25 225 aa12.28□□□□□ -0.44
SYNPO-202ENST00000394243 FLT3P36888 993 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 AP3M2P53677 418 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 CACNB2Q08289 660 aaPredicted RBP12.27□□□□□ -0.44
SYNPO-202ENST00000394243 CNGA2Q16280 664 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.44
SYNPO-202ENST00000394243 ATPAF2Q8N5M1 289 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 FEZF2Q8TBJ5 459 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 DCUN1D1Q96GG9 259 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 SEPHS2Q99611 448 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 PHF20Q9BVI0 1012 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF302Q9NR11 478 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 DKK3Q9UBP4 350 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 RFX7Q2KHR2 1363 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 IDH3BO43837 385 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 GH2P01242 217 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 CRKLP46109 303 aaKnown RBP12.27□□□□□ -0.44
SYNPO-202ENST00000394243 ZSWIM7Q19AV6 140 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 EPC2Q52LR7 807 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 CHSY1Q86X52 802 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 VPS37AQ8NEZ2 397 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 IPMKQ8NFU5 416 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 PACSIN1Q9BY11 444 aa12.27□□□□□ -0.44
SYNPO-202ENST00000394243 PNMA8BQ9ULN7 279 aaPredicted RBP12.27□□□□□ -0.44
SYNPO-202ENST00000394243 FCHO1O14526 889 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PSMG1O95456 288 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ACOT2P49753 483 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 WDR72Q3MJ13 1102 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 TMEM179Q6ZVK1 233 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 AHI1Q8N157 1196 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ENGASEQ8NFI3 743 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 OLFM1Q99784 485 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 SEMA4AQ9H3S1 761 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 CD209Q9NNX6 404 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 NAGPAQ9UK23 515 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 A0A087WXM4 84 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 RAD23AP54725 363 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 MTTPP55157 894 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 XRCC4Q13426 336 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PERM1Q5SV97 790 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 RC3H1Q5TC82 1133 aaKnown RBP12.27□□□□□ -0.45
SYNPO-202ENST00000394243 C11orf63Q6NUN7 778 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PYDC1Q8WXC3 89 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 KCTD10Q9H3F6 313 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ARMCX1Q9P291 453 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PLAGL2Q9UPG8 496 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms