RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GCNT4Q9P109 453 aa14.21□□□□□ -0.13
VPS28-202ENST00000377348 SYCE3A1L190 88 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 PTMSP20962 102 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 ANXA13P27216 316 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 RAD23BP54727 409 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 USP46P62068 366 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 CYP4F8P98187 520 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 TCP11X2Q5H9J9 407 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 MIIPQ5JXC2 388 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 CDKAL1Q5VV42 579 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 PHLDB3Q6NSJ2 640 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 PARM1Q6UWI2 310 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 UBR7Q8N806 425 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 FGF14Q92915 247 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 C8orf48Q96LL4 319 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 ZSWIM3Q96MP5 696 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 KCNK16Q96T55 309 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 TUBGCP2Q9BSJ2 902 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 RPP25Q9BUL9 199 aaKnown RBP14.2□□□□□ -0.14
VPS28-202ENST00000377348 KRT82Q9NSB4 513 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 FANCLQ9NW38 375 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 TAB2Q9NYJ8 693 aa14.2□□□□□ -0.14
VPS28-202ENST00000377348 PTPRDP23468 1912 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 TRIM66O15016 1216 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 DCXO43602 365 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 AP1G2O75843 785 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 BEST1O76090 585 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 NOL4O94818 638 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 CSH1P0DML2 217 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 CSH2P0DML3 217 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 SLC9A1P19634 815 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 TBXAS1P24557 533 aaPredicted RBP14.19□□□□□ -0.14
VPS28-202ENST00000377348 MYL5Q02045 173 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 HTR4Q13639 388 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 NCAPHQ15003 741 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 PTPN21Q16825 1174 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 VWA3BQ502W6 1294 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 PPP1R26Q5T8A7 1209 aaPredicted RBP14.19□□□□□ -0.14
VPS28-202ENST00000377348 GJB7Q6PEY0 223 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 TMEM150AQ86TG1 271 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 GPIHBP1Q8IV16 184 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 AOPEPQ8N6M6 819 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 CYFIP2Q96F07 1278 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 SMARCD1Q96GM5 515 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 SPATA17Q96L03 361 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 HEXIM2Q96MH2 286 aaKnown RBP14.19□□□□□ -0.14
VPS28-202ENST00000377348 KREMEN1Q96MU8 473 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 SMOQ99835 787 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 FUCA2Q9BTY2 467 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 NDST4Q9H3R1 872 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 SLITRK6Q9H5Y7 841 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 ZFP37Q9Y6Q3 630 aaPredicted RBP14.19□□□□□ -0.14
VPS28-202ENST00000377348 NUMBLQ9Y6R0 609 aa14.19□□□□□ -0.14
VPS28-202ENST00000377348 ATP8B3O60423 1300 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 MYO10Q9HD67 2058 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 ANHXE9PGG2 379 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 PI4K2BG5E9Z4 385 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 PES1O00541 588 aaKnown RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 TADA3O75528 432 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 MICAL2O94851 1124 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 F11P03951 625 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 ACO1P21399 889 aaKnown RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 EEF1GP26641 437 aaKnown RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 MAP3K7CLP57077 242 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 IFRD2Q12894 506 aaPredicted RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 EXOC3L4Q17RC7 722 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 FAM78AQ5JUQ0 283 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 GPR158Q5T848 1215 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 TRIM65Q6PJ69 517 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 GBP6Q6ZN66 633 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 DENND5BQ6ZUT9 1274 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 TTC39CQ8N584 583 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 ZMIZ2Q8NF64 920 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 TMEM176AQ96HP8 235 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 MYRFLQ96LU7 910 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 HNRNPABQ99729 332 aaKnown RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 KXD1Q9BQD3 176 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 UBE2TQ9NPD8 197 aaPredicted RBP14.18□□□□□ -0.14
VPS28-202ENST00000377348 GDE1Q9NZC3 331 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 PCDHB4Q9Y5E5 795 aa14.18□□□□□ -0.14
VPS28-202ENST00000377348 RNF225M0QZC1 329 aaPredicted RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 NARSO43776 548 aaKnown RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 FGF19O95750 216 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 CALCAP01258 141 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 FAM200BP0CF97 657 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 TRIM21P19474 475 aaKnown RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 FCARP24071 287 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 PON1P27169 355 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 CDC25CP30307 473 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 YWHAEP62258 255 aaKnown RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 ZXDAP98168 799 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 GCNT1Q02742 428 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 KRT31Q15323 416 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 TANGO2Q6ICL3 276 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 TMEM270Q6UE05 265 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 CLEC20AQ6ZU45 233 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 SLC44A3Q8N4M1 653 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 ZSCAN18Q8TBC5 510 aaPredicted RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 JAKMIP2Q96AA8 810 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 TRMT2BQ96GJ1 504 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms