RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 CFHP08603 1231 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SSTR3P32745 418 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 MAGOHP61326 146 aaKnown RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 PPP2R2AP63151 447 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 CALCOCO2Q13137 446 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 HABP4Q5JVS0 413 aaKnown RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SLC24A5Q71RS6 500 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 HERC6Q8IVU3 1022 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SLC9A7Q96T83 725 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 ZBED2Q9BTP6 218 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 FAM129AQ9BZQ8 928 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 EPB41L4BQ9H329 900 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 PRMT7Q9NVM4 692 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 CNTN6Q9UQ52 1028 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 TNFSF9P41273 254 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SNX1Q13596 522 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SLMAPQ14BN4 828 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 LRIT3Q3SXY7 679 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 MMS22LQ6ZRQ5 1243 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 PHF13Q86YI8 300 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 WDR49Q8IV35 697 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 C10orf67Q8IYJ2 551 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 RNF169Q8NCN4 708 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 PHOSPHO2Q8TCD6 241 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SLCO2A1Q92959 643 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 ART4Q93070 314 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 TSPYL1Q9H0U9 437 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SCINQ9Y6U3 715 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 TTC3P53804 2025 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 ACKR2O00590 384 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 SHBGP04278 402 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 MAN1A1P33908 653 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 C1QBPQ07021 282 aaKnown RBP16.39■□□□□ 0.21
CCDC40-202ENST00000374876 MAMLD1Q13495 774 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 TMEM132AQ24JP5 1023 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 CCDC50Q8IVM0 306 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 FAM212AQ96EL1 285 aa16.39■□□□□ 0.21
CCDC40-202ENST00000374876 DDX27Q96GQ7 796 aaKnown RBP16.39■□□□□ 0.21
CCDC40-202ENST00000374876 EIF2AQ9BY44 585 aaKnown RBP16.39■□□□□ 0.21
CCDC40-202ENST00000374876 SZT2Q5T011 3432 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SRRM3A6NNA2 597 aaPredicted RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PSTPIP1O43586 416 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 GJB5O95377 273 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 CDR1P51861 262 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 FAM189BP81408 668 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 KRT17Q04695 432 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PTP4A2Q12974 167 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SLC29A2Q14542 456 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PCBP1Q15365 356 aaKnown RBP eCLIP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 FAM187BQ17R55 369 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 UBXN11Q5T124 520 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 B4GALNT4Q76KP1 1039 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 RHOT1Q8IXI2 618 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 CRIPAKQ8N1N5 446 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 RNF25Q96BH1 459 aaPredicted RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 LRCH3Q96II8 777 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ACO2Q99798 780 aaKnown RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PBX4Q9BYU1 374 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SEMA4AQ9H3S1 761 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PARVAQ9NVD7 372 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SLC12A6Q9UHW9 1150 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PCDHB7Q9Y5E2 793 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 A0A0U1RQF3 1178 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 A0A1B0GUA9 196 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 E7EVH7 732 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 TRIM66O15016 1216 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 OGTO15294 1046 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 TLL1O43897 1013 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ASS1P00966 412 aaKnown RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 CST3P01034 146 aaPredicted RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SSR1P43307 286 aaKnown RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 CORO7P57737 925 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 DUOXA2Q1HG44 320 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 DAB2IPQ5VWQ8 1189 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PLEKHA7Q6IQ23 1121 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 NOTUMQ6P988 496 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 SYDE1Q6ZW31 735 aaPredicted RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 NLRP14Q86W24 1093 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ECHDC2Q86YB7 292 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 GRK7Q8WTQ7 553 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ZNF606Q8WXB4 792 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ATG4AQ8WYN0 398 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 MTMR12Q9C0I1 747 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 LRRC4CQ9HCJ2 640 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 PPANQ9NQ55 473 aaKnown RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 CHST7Q9NS84 486 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 FAM105AQ9NUU6 356 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ASIC3Q9UHC3 531 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 FEZ2Q9UHY8 353 aaPredicted RBP16.38■□□□□ 0.21
CCDC40-202ENST00000374876 LRFN2Q9ULH4 789 aa16.38■□□□□ 0.21
CCDC40-202ENST00000374876 ANKRD65E5RJM6 399 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 FAM189A1O60320 539 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 GAS8O95995 478 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 RARGP13631 454 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 AXLP30530 894 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 GATMP50440 423 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 ZNF132P52740 706 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 SEC24CP53992 1094 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 BYSLQ13895 437 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms