RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 HAUS8Q9BT25 410 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 KCNMB3Q9NPA1 279 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 CNTNAP2Q9UHC6 1331 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 AXLP30530 894 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 FAM133BQ5BKY9 247 aaKnown RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 OTOP2Q7RTS6 562 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 USP38Q8NB14 1042 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 MLXIPLQ9NP71 852 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 ITGA11Q9UKX5 1188 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 CABYRO75952 493 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 ART3Q13508 389 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 ZRANB3Q5FWF4 1079 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 TBC1D1Q86TI0 1168 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 SLC13A5Q86YT5 568 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 DACT3Q96B18 629 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 ATP6V1G3Q96LB4 118 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 EFHD1Q9BUP0 239 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 SLC28A3Q9HAS3 691 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 HPS4Q9NQG7 708 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 MRC1P22897 1456 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 KIF3CO14782 793 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 PPP2R2AP63151 447 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 NECAB2Q7Z6G3 386 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TMCO5AQ8N6Q1 288 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 WDCPQ9H6R7 721 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 SMARCAL1Q9NZC9 954 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 EPS15L1Q9UBC2 864 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 ZNF197O14709 1029 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 MAPK13O15264 365 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 PPFIA2O75334 1257 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 SETSIPP0DME0 302 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 LAMB3Q13751 1172 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TRMT10CQ7L0Y3 403 aaKnown RBP12.07□□□□□ -0.48
SYNE1-204ENST00000367248 NUDCD3Q8IVD9 361 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TMEM176AQ96HP8 235 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 WNK4Q96J92 1243 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 SYT15Q9BQS2 421 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 OSGEPL1Q9H4B0 414 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 Q9H521 79 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 NEU2Q9Y3R4 380 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 RICTORQ6R327 1708 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 F8VZ95 297 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TREML2Q5T2D2 321 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 ZNF697Q5TEC3 545 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TEKT4Q8WW24 435 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 RUBCNQ92622 972 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 PPP1R2P1Q96PQ5 205 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 CINPQ9BW66 212 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-204ENST00000367248 NFKBIZQ9BYH8 718 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 LSM8O95777 96 aaKnown RBP12.07□□□□□ -0.48
SYNE1-204ENST00000367248 RRM1P23921 792 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 ACAD11Q709F0 780 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 VPS28Q9UK41 221 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TRPV2Q9Y5S1 764 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 KCNJ1P48048 391 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 MAP2K5Q13163 448 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 F5H5T6 163 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 ZBTB39O15060 712 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 TLR2O60603 784 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 GRK4P32298 578 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 FOPNLQ96NB1 174 aa12.07□□□□□ -0.48
SYNE1-204ENST00000367248 CDH16O75309 829 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 LCA5Q86VQ0 697 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 TPCN2Q8NHX9 752 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 GAS2L1Q99501 681 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 A0A087X0B3 334 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 SPDYE5A6NIY4 337 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 MSCO60682 206 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 SPATA31D3P0C874 917 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 GCNT1Q02742 428 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 PLD1Q13393 1074 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 OVOS1Q6IE37 1185 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 NAPEPLDQ6IQ20 393 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 SPATA31D4Q6ZUB0 917 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 USH1CQ9Y6N9 552 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 NT5C1B-RDH14C9J2C7 533 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 FGRP09769 529 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 STIP1P31948 543 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 CLNS1AP54105 237 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 LZICQ8WZA0 190 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 DDX43Q9NXZ2 648 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 ADAM21Q9UKJ8 722 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 NUDT5Q9UKK9 219 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 NDUFS3O75489 264 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 DCTN3O75935 186 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 HIST1H2AGP0C0S8 130 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 HIST1H2ADP20671 130 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 SARSP49591 514 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 PMS1P54277 932 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 BST2Q10589 180 aaKnown RBP12.06□□□□□ -0.48
SYNE1-204ENST00000367248 DDIASQ8IXT1 998 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 EDEM1Q92611 657 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 FAM136AQ96C01 138 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 HIST1H2AHQ96KK5 128 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 HIST1H2AJQ99878 128 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 H2AFJQ9BTM1 129 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 PMPCBO75439 489 aa12.06□□□□□ -0.48
SYNE1-204ENST00000367248 BTBD6Q96KE9 485 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms