RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ADCY1Q08828 1119 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 KCTD2Q14681 263 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 TBCCQ15814 346 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 UGCGQ16739 394 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 TRMT5Q32P41 509 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 C1orf220Q5T0J3 134 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 LIN9Q5TKA1 542 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 MAP1SQ66K74 1059 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 KRT39Q6A163 491 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 NET1Q7Z628 596 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 ANKRD23Q86SG2 305 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 MCOLN2Q8IZK6 566 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 PPM1KQ8N3J5 372 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 C2orf69Q8N8R5 385 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 STKLD1Q8NE28 680 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 FAM81AQ8TBF8 368 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 DDX1Q92499 740 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 SKA1Q96BD8 255 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 RBM41Q96IZ5 413 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 NTPCRQ9BSD7 190 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 TMEM117Q9H0C3 514 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 PIDD1Q9HB75 910 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 GBA2Q9HCG7 927 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 GPAMQ9HCL2 828 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 TXNRD2Q9NNW7 524 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 GRID1Q9ULK0 1009 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 COMMD3-BMI1R4GMX3 469 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 IGKV6D-21A0A0A0MT36 114 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 CREB3O43889 395 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 KRT36O76013 467 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 SUPT20HL2P0C7V6 817 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 RALAP11233 206 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 ESRRAP11474 423 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 DLG4P78352 724 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 Q3C1V9 767 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 RFWD3Q6PCD5 774 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 DSTYKQ6XUX3 929 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 TRIM72Q6ZMU5 477 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 ADGRG6Q86SQ4 1221 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 CPNE8Q86YQ8 564 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 B4GALNT2Q8NHY0 566 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 CCDC110Q8TBZ0 833 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 NRG4Q8WWG1 115 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 SPOCK2Q92563 424 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 KCNN1Q92952 543 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 IKZF4Q9H2S9 585 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 BCAS3Q9H6U6 928 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 MANSC1Q9H8J5 431 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 VPS37BQ9H9H4 285 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 MRPL47Q9HD33 250 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 HSPBP1Q9NZL4 362 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 NDUFA13Q9P0J0 144 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 GABBR1Q9UBS5 961 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 R3HDM2Q9Y2K5 976 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 PPME1Q9Y570 386 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 MAFBQ9Y5Q3 323 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 EIF4E1BA6NMX2 242 aaKnown RBP16.63■□□□□ 0.25
HMGA1-202ENST00000347617 CIB2O75838 187 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 VPS41P49754 854 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 SESN3P58005 492 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 ZBTB16Q05516 673 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 MCL1Q07820 350 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 XKR9Q5GH70 373 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 XKR3Q5GH77 459 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 ANO5Q75V66 913 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 PHLDB2Q86SQ0 1253 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 TRIM42Q8IWZ5 723 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 RDH13Q8NBN7 331 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 PIP4K2CQ8TBX8 421 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 TMC2Q8TDI7 906 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 VCPIP1Q96JH7 1222 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 MMP19Q99542 508 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 TMEM8AQ9HCN3 771 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 PDLIM7Q9NR12 457 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 ARL8BQ9NVJ2 186 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 HEY2Q9UBP5 337 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 EXOC7Q9UPT5 735 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 SSX2IPQ9Y2D8 614 aa16.63■□□□□ 0.25
HMGA1-202ENST00000347617 TBX10O75333 385 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 DGAT1O75907 488 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 RARBP10826 455 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 UNGP13051 313 aaPredicted RBP16.62■□□□□ 0.25
HMGA1-202ENST00000347617 GTF2BQ00403 316 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 SP2Q02086 613 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 GCNT1Q02742 428 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 SWSAP1Q6NVH7 229 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 ADGRD1Q6QNK2 874 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 TMPRSS6Q8IU80 811 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 KSR1Q8IVT5 923 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 RCOR2Q8IZ40 523 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 ABRAQ8N0Z2 381 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 C4orf33Q8N1A6 199 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 PDCD7Q8N8D1 485 aaKnown RBP16.62■□□□□ 0.25
HMGA1-202ENST00000347617 ATP11CQ8NB49 1132 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 MCPH1Q8NEM0 835 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 GPRC5AQ8NFJ5 357 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 HELQQ8TDG4 1101 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 SPIRE2Q8WWL2 714 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 PPP2R3CQ969Q6 453 aa16.62■□□□□ 0.25
HMGA1-202ENST00000347617 TSSK1BQ9BXA7 367 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms