RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ITPRIPL2Q3MIP1 535 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 TRIM68Q6AZZ1 485 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 SYAP1Q96A49 352 aaPredicted RBP20.85■□□□□ 0.93
LIME1-201ENST00000309546 PCED1BQ96HM7 432 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 GKN1Q9NS71 199 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 HPSEQ9Y251 543 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 NME7Q9Y5B8 376 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 HELZP42694 1942 aaKnown RBP20.84■□□□□ 0.93
LIME1-201ENST00000309546 LRRIQ3A6PVS8 624 aaPredicted RBP20.84■□□□□ 0.93
LIME1-201ENST00000309546 TACC1O75410 805 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 CKMP06732 381 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 CCR3P51677 355 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 NDUFA8P51970 172 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 PPP2R5DQ14738 602 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 TDRD10Q5VZ19 366 aaKnown RBP20.84■□□□□ 0.93
LIME1-201ENST00000309546 CC2D1AQ6P1N0 951 aaPredicted RBP20.84■□□□□ 0.93
LIME1-201ENST00000309546 VSTM1Q6UX27 236 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 Q6ZS52 159 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 FSIP1Q8NA03 581 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 RIN3Q8TB24 985 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 MYCBPAPQ8TBZ2 947 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 MYRFLQ96LU7 910 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 DPEP3Q9H4B8 488 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 EBF3Q9H4W6 596 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 ATP6V1DQ9Y5K8 247 aa20.84■□□□□ 0.93
LIME1-201ENST00000309546 TRAV19A0A0A6YYK7 116 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 SOBPA7XYQ1 873 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 A8MXQ7 604 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 NR3C1P04150 777 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 RPN1P04843 607 aaKnown RBP20.83■□□□□ 0.93
LIME1-201ENST00000309546 MYL1P05976 194 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 PRR29P0C7W0 189 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 ATICP31939 592 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 SATB1Q01826 763 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 ZNF699Q32M78 642 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 WDR44Q5JSH3 913 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 DGKKQ5KSL6 1271 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 SCARA5Q6ZMJ2 495 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 SUMF1Q8NBK3 374 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 ZBTB44Q8NCP5 570 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 CCDC47Q96A33 483 aaKnown RBP20.83■□□□□ 0.93
LIME1-201ENST00000309546 SLC22A12Q96S37 553 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 CYP2S1Q96SQ9 504 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 FAM83CQ9BQN1 747 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 XYLT2Q9H1B5 865 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 KCTD10Q9H3F6 313 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 HPS4Q9NQG7 708 aa20.83■□□□□ 0.93
LIME1-201ENST00000309546 TRIM66O15016 1216 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 STAU1O95793 577 aaKnown RBP20.82■□□□□ 0.92
LIME1-201ENST00000309546 USP17L7P0C7H9 530 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 PTPN1P18031 435 aaKnown RBP20.82■□□□□ 0.92
LIME1-201ENST00000309546 RAP1GAPP47736 663 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 CXCL12P48061 93 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 FAM160A1Q05DH4 1040 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 RUNX3Q13761 415 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 GAS6Q14393 721 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 ZNF268Q14587 947 aaPredicted RBP20.82■□□□□ 0.92
LIME1-201ENST00000309546 KCNB1Q14721 858 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 MTF1Q14872 753 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 CEP135Q66GS9 1140 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 DENND5BQ6ZUT9 1274 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 KIAA2013Q8IYS2 634 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 DCLK2Q8N568 766 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 ARL14EPQ8N8R7 260 aaPredicted RBP20.82■□□□□ 0.92
LIME1-201ENST00000309546 PARD3BQ8TEW8 1205 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 RUBCNQ92622 972 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 ELMO3Q96BJ8 720 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 SPATA17Q96L03 361 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 SMYD3Q9H7B4 428 aa20.82■□□□□ 0.92
LIME1-201ENST00000309546 C2orf78A6NCI8 922 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 F8VP50 259 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 PDXKO00764 312 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 ARSAP15289 507 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 AP3M2P53677 418 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 USP46P62068 366 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 DLG4P78352 724 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 IFRD2Q12894 506 aaPredicted RBP20.81■□□□□ 0.92
LIME1-201ENST00000309546 NCOA4Q13772 614 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 ZNF667Q5HYK9 610 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 SLC9A9Q8IVB4 645 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 SPEM1Q8N4L4 309 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 NELL1Q92832 810 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 FAM126AQ9BYI3 521 aaPredicted RBP20.81■□□□□ 0.92
LIME1-201ENST00000309546 ZNF518BQ9C0D4 1074 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 SCAND2PQ9GZW5 306 aaPredicted RBP20.81■□□□□ 0.92
LIME1-201ENST00000309546 GDPD2Q9HCC8 539 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 DMAC2Q9NW81 257 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 NCDNQ9UBB6 729 aa20.81■□□□□ 0.92
LIME1-201ENST00000309546 SMG5Q9UPR3 1016 aaKnown RBP20.81■□□□□ 0.92
LIME1-201ENST00000309546 CLDN5O00501 218 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 CALUO43852 315 aaPredicted RBP20.8■□□□□ 0.92
LIME1-201ENST00000309546 LILRB5O75023 590 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 FAM163BP0C2L3 166 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 USP4Q13107 963 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 B3GALNT2Q8NCR0 500 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 ELOVL4Q9GZR5 314 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 GOLPH3LQ9H4A5 285 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 DUS2Q9NX74 493 aaKnown RBP20.8■□□□□ 0.92
LIME1-201ENST00000309546 FRMD4BQ9Y2L6 1034 aa20.8■□□□□ 0.92
LIME1-201ENST00000309546 GVINP1Q7Z2Y8 2422 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms