RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 RSPH3Q86UC2 560 aa13.25□□□□□ -0.29
RETREG3-201ENST00000309428 FAM83AQ86UY5 434 aa13.25□□□□□ -0.29
RETREG3-201ENST00000309428 ATXN2LQ8WWM7 1075 aaKnown RBP13.25□□□□□ -0.29
RETREG3-201ENST00000309428 ZNF317Q96PQ6 595 aaPredicted RBP13.25□□□□□ -0.29
RETREG3-201ENST00000309428 GMLQ99445 158 aa13.25□□□□□ -0.29
RETREG3-201ENST00000309428 CISHQ9NSE2 258 aa13.25□□□□□ -0.29
RETREG3-201ENST00000309428 AFG3L2Q9Y4W6 797 aa13.25□□□□□ -0.29
RETREG3-201ENST00000309428 UBE4BO95155 1302 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 RPTORQ8N122 1335 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 A0A1W2PPM1 405 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 MEI4A8MW99 385 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 MYCP01106 439 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 F7P08709 466 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 MAPTP10636 758 aaKnown RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 BGNP21810 368 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 CRELD2Q6UXH1 353 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 CCNJLQ8IV13 435 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 RHOT1Q8IXI2 618 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 FAM71DQ8N9W8 422 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 FAXDC2Q96IV6 333 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 CENPKQ9BS16 269 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 HOXC10Q9NYD6 342 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 HNRNPCP07910 306 aaKnown RBP eCLIP13.24□□□□□ -0.292e-12■■■■□ 20
RETREG3-201ENST00000309428 RABGGTBP53611 331 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 LGSNQ5TDP6 509 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 DPY19L2P1Q6NXN4 242 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 EFCAB12Q6NXP0 572 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 TLCD1Q96CP7 247 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 DCLRE1BQ9H816 532 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 PIDD1Q9HB75 910 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 STXBP5LQ9Y2K9 1186 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 SPDYE16A6NNV3 312 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 TCN1P20061 433 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 MMP14P50281 582 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 ARL4CP56559 192 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 CAPSQ13938 189 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 C11orf63Q6NUN7 778 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 NPNTQ6UXI9 565 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 NUDCD3Q8IVD9 361 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 GALNT4Q8N4A0 578 aa13.24□□□□□ -0.29
RETREG3-201ENST00000309428 ZNF483Q8TF39 744 aaPredicted RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 DDX18Q9NVP1 670 aaKnown RBP13.24□□□□□ -0.29
RETREG3-201ENST00000309428 EXTL3O43909 919 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 TJP3O95049 919 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 EDN1P05305 212 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 NUDT17P0C025 328 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ADORA2BP29275 332 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ASPHQ12797 758 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 MMRN1Q13201 1228 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 KRT81Q14533 505 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ZDHHC24Q6UX98 284 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 C12orf29Q8N999 325 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 FAF2Q96CS3 445 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 MANSC1Q9H8J5 431 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 MRPL47Q9HD33 250 aaKnown RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ZWINTO95229 277 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 STAMBPO95630 424 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 LMNAP02545 664 aaKnown RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 CD48P09326 243 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 PECAM1P16284 738 aaPredicted RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 KCNA2P16389 499 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 LMNB2Q03252 620 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 TFDP1Q14186 410 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 EFTUD2Q15029 972 aaKnown RBP eCLIP13.23□□□□□ -0.294e-7■■■□□ 16.7
RETREG3-201ENST00000309428 KIZQ2M2Z5 673 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 MMEL1Q495T6 779 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 NSL1Q96IY1 281 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 HIC2Q96JB3 615 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 KCND2Q9NZV8 630 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 BTBD7Q9P203 1132 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ZNF214Q9UL59 606 aaPredicted RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 GOLGA4Q13439 2230 aaKnown RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 A0A087WZ62 844 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 DKC1O60832 514 aaKnown RBP eCLIP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 USP1O94782 785 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ARL1P40616 181 aaPredicted RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 BNIP1Q12981 228 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 NFX1Q12986 1120 aaKnown RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ZNF667Q5HYK9 610 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 SH2D4BQ5SQS7 431 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 CRLF3Q8IUI8 442 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 TCP10LQ8TDR4 215 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 PPP4R1Q8TF05 950 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 PPWD1Q96BP3 646 aaKnown RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 FDXACB1Q9BRP7 624 aaPredicted RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 DENND2DQ9H6A0 471 aaPredicted RBP13.23□□□□□ -0.29
RETREG3-201ENST00000309428 ANKEF1Q9NU02 776 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 CACNG4Q9UBN1 327 aa13.23□□□□□ -0.29
RETREG3-201ENST00000309428 LAMB1P07942 1786 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 KIF3CO14782 793 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 RNF8O76064 485 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 KRT3P12035 628 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 RFC1P35251 1148 aaPredicted RBP13.22□□□□□ -0.29
RETREG3-201ENST00000309428 SOX11P35716 441 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 AP2B1P63010 937 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 BMPR2Q13873 1038 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 MTFR1Q15390 333 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 C15orf59Q2T9L4 293 aaPredicted RBP13.22□□□□□ -0.29
RETREG3-201ENST00000309428 SH3PXD2AQ5TCZ1 1133 aa13.22□□□□□ -0.29
RETREG3-201ENST00000309428 RFWD3Q6PCD5 774 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms