RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 N4BP2L2Q92802 583 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 MORF4L1Q9UBU8 362 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 KIAA1551Q9HCM1 1747 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MLYCDO95822 493 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 NUDT17P0C025 328 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 PLTPP55058 493 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SH3BP5LQ7L8J4 393 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SPATA21Q7Z572 469 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 RHPN2Q8IUC4 686 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 NUDCD3Q8IVD9 361 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.17□□□□□ -1.74
USH2A-201ENST00000307340 DCP1AQ9NPI6 582 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 KCNK4Q9NYG8 393 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 STOML2Q9UJZ1 356 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 GSTM5P46439 218 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MFSD5Q6N075 450 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 TMPRSS6Q8IU80 811 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 UNC45BQ8IWX7 931 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 QRFPRQ96P65 431 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 KLHL3Q9UH77 587 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MTMR7Q9Y216 660 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 E2F3O00716 465 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ALOX5P09917 674 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 USP17L8P0C7I0 530 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MLNP12872 115 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 EIF4A3P38919 411 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 PRKCQQ04759 706 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ZNF572Q7Z3I7 529 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 ARL10Q8N8L6 244 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 CAMKK2Q96RR4 588 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 WDR12Q9GZL7 423 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 ACAD9Q9H845 621 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 UBE2TQ9NPD8 197 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 WWP2O00308 870 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SGTAO43765 313 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SLC15A2Q16348 729 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 FAM47AQ5JRC9 791 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 INTS11Q5TA45 600 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 KIAA0408Q6ZU52 694 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SHCBP1Q8NEM2 672 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 PPHLN1Q8NEY8 458 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 CENPOQ9BU64 300 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 UXTQ9UBK9 157 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 ARIH1Q9Y4X5 557 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 TNS2Q63HR2 1409 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 TNRC6CQ9HCJ0 1690 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 ENTPD5O75356 428 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SRPRAP08240 638 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 PDGFRBP09619 1106 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 BCAP31P51572 246 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 CDC16Q13042 620 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SAMD4BQ5PRF9 694 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 UNC5CLQ8IV45 518 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 DHX40Q8IX18 779 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 TGFBRAP1Q8WUH2 860 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 CPNE1Q99829 537 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 NT5C1AQ9BXI3 368 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SENP3Q9H4L4 574 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 PALMDQ9NP74 551 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 RYDENQ9NUL5 291 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 MAFFQ9ULX9 164 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 PLAAQ9Y263 795 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MED26O95402 600 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 COL6A2P12110 1019 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 TPP2P29144 1249 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 RP9Q8TA86 221 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 EME1Q96AY2 570 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 TJP2Q9UDY2 1190 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ROBO2Q9HCK4 1378 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 KCNK10P57789 538 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ARMCX4Q5H9R4 360 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SKA1Q96BD8 255 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 PRICKLE1Q96MT3 831 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 C9orf16Q9BUW7 83 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 HPSEQ9Y251 543 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 MRC1P22897 1456 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 H7C0C1 242 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 STX7O15400 261 aaKnown RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 ATP5OP48047 213 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 CDR2LQ86X02 465 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 SAMD14Q8IZD0 417 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 MYCBPAPQ8TBZ2 947 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SEPT1Q8WYJ6 367 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ATP6V1E2Q96A05 226 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ADNPQ9H2P0 1102 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 BBIP1A8MTZ0 92 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 H3BUI4 141 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 DYNC1LI2O43237 492 aaPredicted RBP4.17□□□□□ -1.74
USH2A-201ENST00000307340 CABYRO75952 493 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 BTDP43251 543 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 PRAMEP78395 509 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 ACVR2BQ13705 512 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 SNAP47Q5SQN1 464 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 DDX42Q86XP3 938 aaKnown RBP eCLIP4.17□□□□□ -1.74
USH2A-201ENST00000307340 USP33Q8TEY7 942 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 C3orf18Q9UK00 162 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 NAGPAQ9UK23 515 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 TRAF3IP3Q9Y228 551 aa4.17□□□□□ -1.74
USH2A-201ENST00000307340 NTRK1P04629 796 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms