RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RXFP2Q8WXD0 754 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 NDRG1Q92597 394 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 ART4Q93070 314 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 MAK16Q9BXY0 300 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 CDC42EP4Q9H3Q1 356 aaKnown RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 HESX1Q9UBX0 185 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 FEZ2Q9UHY8 353 aaPredicted RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 GJD2Q9UKL4 321 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 C2CD2Q9Y426 696 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 TIMM13Q9Y5L4 95 aaPredicted RBP12.08□□□□□ -0.48
CUX1-202ENST00000292538 COL1A2P08123 1366 aa12.08□□□□□ -0.48
CUX1-202ENST00000292538 RGS2P41220 211 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 KLF1Q13351 362 aaPredicted RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 DCAF4L1Q3SXM0 396 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 PPP6R3Q5H9R7 873 aaPredicted RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 CHADLQ6NUI6 762 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 RGMBQ6NW40 437 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 C1orf228Q6PIY5 440 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 IFNL1Q8IU54 200 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CLEC4CQ8WTT0 213 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 LPPQ93052 612 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 MLXIPLQ9NP71 852 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CTNNAL1Q9UBT7 734 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 MKI67P46013 3256 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 SMIM28A0A1B0GU29 152 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 RIPK2O43353 540 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CDH6P55285 790 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 TRIM32Q13049 653 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CNGA2Q16280 664 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CCNG2Q16589 344 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 PAN2Q504Q3 1202 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 NPNTQ6UXI9 565 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 LRIG3Q6UXM1 1119 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 SAPCD2Q86UD0 394 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 EIF1ADQ8N9N8 165 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.07□□□□□ -0.483e-6■□□□□ 8.8
CUX1-202ENST00000292538 USP18Q9UMW8 372 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 RASGRF2O14827 1237 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 BANF1O75531 89 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 AFF1P51825 1210 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 DRG2P55039 364 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 OTUD4Q01804 1114 aaKnown RBP12.07□□□□□ -0.48
CUX1-202ENST00000292538 CCDC89Q8N998 374 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 ACTL9Q8TC94 416 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 SNX27Q96L92 541 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 LHX5Q9H2C1 402 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 EPB41L4BQ9H329 900 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 SNX25Q9H3E2 840 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CYP3A43Q9HB55 503 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 ZFYVE28Q9HCC9 887 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 CALCOCO1Q9P1Z2 691 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 HEY1Q9Y5J3 304 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 KAT6AQ92794 2004 aa12.07□□□□□ -0.48
CUX1-202ENST00000292538 TCRBV5S1A1TA0A578 114 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 MANSC4A6NHS7 340 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 SPTLC1O15269 473 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 LIASO43766 372 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 ATP2C2O75185 946 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 CTGFP29279 349 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 LSP1P33241 339 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 GNL1P36915 607 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 IFNAR2P48551 515 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 ATXN1P54253 815 aaKnown RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 SLMAPQ14BN4 828 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 SOWAHAQ2M3V2 549 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 C9orf57Q5W0N0 161 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 PPP1R2P3Q6NXS1 205 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 TTC30AQ86WT1 665 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 IFNLR1Q8IU57 520 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 CD302Q8IX05 232 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 ARRDC4Q8NCT1 418 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 FAM149B1Q96BN6 582 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 RUNDC3BQ96NL0 473 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 CWC15Q9P013 229 aaKnown RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 LAMA2P24043 3122 aaKnown RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 hCG_1818297A0A087WSY0 165 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 SMIM35A0A1B0GVV1 85 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 BHMG1C9JSJ3 638 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 CLDN5O00501 218 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 EIF3HO15372 352 aaKnown RBP eCLIP12.06□□□□□ -0.481e-7■■■□□ 16.5
CUX1-202ENST00000292538 HMGCRP04035 888 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 ITIH2P19823 946 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 CDKN2BP42772 138 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 SOX4Q06945 474 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 KRT81Q14533 505 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 FBXO47Q5MNV8 452 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 PPP1R15BQ5SWA1 713 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 APBB1IPQ7Z5R6 666 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 HOOK3Q86VS8 718 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 C12orf50Q8NA57 414 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 NETO2Q8NC67 525 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.06□□□□□ -0.48
CUX1-202ENST00000292538 RSAD2Q8WXG1 361 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 TRAIPQ9BWF2 469 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 MAGEB5Q9BZ81 275 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 SAYSD1Q9NPB0 183 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 GABRQQ9UN88 632 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 IPPQ9Y573 584 aa12.06□□□□□ -0.48
CUX1-202ENST00000292538 NME7Q9Y5B8 376 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms