RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 CAMKK2Q96RR4 588 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 MBD2Q9UBB5 411 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 TRMT6Q9UJA5 497 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GTF3C4Q9UKN8 822 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 SLC39A10Q9ULF5 831 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 STARD13Q9Y3M8 1113 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 A0A0A6YYK5 440 aaPredicted RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 PP2D1A8MPX8 630 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 RPLP2P05387 115 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 SCTRP47872 440 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 KLHDC7AQ5VTJ3 777 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 KIF2BQ8N4N8 673 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 ZIM3Q96PE6 472 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 KLHL31Q9H511 634 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 VPS26AO75436 327 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 PRIM2P49643 509 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 STAT5BP51692 787 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GPSM2P81274 684 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 NAB1Q13506 487 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 CYB5D1Q6P9G0 228 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 SH3BP5LQ7L8J4 393 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 DDX53Q86TM3 631 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 FEZF2Q8TBJ5 459 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 EFCAB1Q9HAE3 211 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GEMIN8Q9NWZ8 242 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 KNL1Q8NG31 2342 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 CITO14578 2027 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 TMEM191CA6NGB0 347 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 VWA5AO00534 786 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GARTP22102 1010 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 SBK1Q52WX2 424 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 LRRC6Q86X45 466 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 DAGLBQ8NCG7 672 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 WWOXQ9NZC7 414 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 TMCC3Q9ULS5 477 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 PPLO60437 1756 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GYPCP04921 128 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 ITGA9Q13797 1035 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 COG2Q14746 738 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 LRRC36Q1X8D7 754 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 GOLGA7BQ2TAP0 167 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 HEATR4Q86WZ0 1026 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 FAM71DQ8N9W8 422 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 CASP10Q92851 521 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 SPACA6W5XKT8 324 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 PRKAA2P54646 552 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 FGD2Q7Z6J4 655 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 COQ7Q99807 217 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 COPG2Q9UBF2 871 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 AAR2Q9Y312 384 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 STX7O15400 261 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 FKBP6O75344 327 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 RBP1P09455 135 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 JAK1P23458 1154 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 C1DQ13901 141 aaKnown RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 TAB1Q15750 504 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 ZNF467Q7Z7K2 595 aaPredicted RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 TC2NQ8N9U0 490 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 ANKEF1Q9NU02 776 aa8.27□□□□□ -1.09
LIMD1-201ENST00000273317 PRMT7Q9NVM4 692 aaPredicted RBP8.27□□□□□ -1.09
LIMD1-201ENST00000273317 NPHP3-ACAD11A0A0J9YXS1 232 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 IGKV5-2P06315 115 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 ODC1P11926 461 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 PRLRP16471 622 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 TARSP26639 723 aaKnown RBP8.26□□□□□ -1.09
LIMD1-201ENST00000273317 GEMP55040 296 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 FMR1Q06787 632 aaKnown RBP eCLIP8.26□□□□□ -1.093e-12■■■■■ 43.2
LIMD1-201ENST00000273317 SEL1L3Q68CR1 1132 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 C11orf63Q6NUN7 778 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 CD302Q8IX05 232 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 RPAP3Q9H6T3 665 aaPredicted RBP8.26□□□□□ -1.09
LIMD1-201ENST00000273317 SLC24A2Q9UI40 661 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 HNRNPH1P31943 449 aaKnown RBP8.26□□□□□ -1.09
LIMD1-201ENST00000273317 ARL4DP49703 201 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 SFSWAPQ12872 951 aaKnown RBP8.26□□□□□ -1.09
LIMD1-201ENST00000273317 NFX1Q12986 1120 aaKnown RBP8.26□□□□□ -1.09
LIMD1-201ENST00000273317 ZFP1Q6P2D0 407 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 IPMKQ8NFU5 416 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 RNF112Q9ULX5 631 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 LINC00854A0A1B0GVQ3 168 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 PRAMEF22A3QJZ6 481 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 FBXO21O94952 628 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 PTGER2P43116 358 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 BTKQ06187 659 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 TGM3Q08188 693 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 DMPKQ09013 629 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 MMRN1Q13201 1228 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 CAVIN3Q969G5 261 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 DEPDC7Q96QD5 511 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 TEX13BQ9BXU2 312 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 TRPC7Q9HCX4 862 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 PIM2Q9P1W9 311 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 AP3M1Q9Y2T2 418 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 RAD54BQ9Y620 910 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 SOAT1P35610 550 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 NOTUMQ6P988 496 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 TTC30AQ86WT1 665 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 LDHDQ86WU2 507 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 RXFP1Q9HBX9 757 aa8.26□□□□□ -1.09
LIMD1-201ENST00000273317 KRT84Q9NSB2 600 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms