RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RABGEF1Q9UJ41 708 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 WDR90Q96KV7 1748 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 ARHGAP42A6NI28 874 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 KBTBD13C9JR72 458 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 MT-ND3P03897 115 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 KRT19P08727 400 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 TROVE2P10155 538 aaKnown RBP eCLIP13.62□□□□□ -0.23
SNX1-201ENST00000261889 YBX3P16989 372 aaKnown RBP eCLIP13.62□□□□□ -0.23
SNX1-201ENST00000261889 GPC3P51654 580 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 FSTL1Q12841 308 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 PTK7Q13308 1070 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 GPAT2Q6NUI2 795 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 DNAJC24Q6P3W2 148 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 LRRC74BQ6ZQY2 392 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 CENPUQ71F23 418 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 RSAD2Q8WXG1 361 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 ZNF333Q96JL9 665 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 MTMR12Q9C0I1 747 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 C20orf27Q9GZN8 174 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 POLR3FQ9H1D9 316 aaPredicted RBP13.62□□□□□ -0.23
SNX1-201ENST00000261889 CPSF2Q9P2I0 782 aaKnown RBP13.62□□□□□ -0.23
SNX1-201ENST00000261889 PCDHB2Q9Y5E7 798 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 HEY1Q9Y5J3 304 aa13.62□□□□□ -0.23
SNX1-201ENST00000261889 ZNF536O15090 1300 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 MYH9P35579 1960 aaKnown RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 MTA2O94776 668 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 IRX1P78414 480 aaPredicted RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 SLC25A3Q00325 362 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 PRKG1Q13976 671 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 MROH9Q5TGP6 573 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 LIN9Q5TKA1 542 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 LPCAT4Q643R3 524 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 GPD1LQ8N335 351 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 ZNF606Q8WXB4 792 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 TFAP2BQ92481 460 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 PHF12Q96QT6 1004 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 CEP41Q9BYV8 373 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 PPM1HQ9ULR3 514 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 RPL22P35268 128 aaKnown RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 RNASEH2BQ5TBB1 312 aaKnown RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 FAM219BQ5XKK7 198 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 FAM43BQ6ZT52 329 aaPredicted RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 CEP120Q8N960 986 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 GSTCDQ8NEC7 633 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 FEZF2Q8TBJ5 459 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 RBAKQ9NYW8 714 aaPredicted RBP13.61□□□□□ -0.23
SNX1-201ENST00000261889 ATAD5Q96QE3 1844 aa13.61□□□□□ -0.23
SNX1-201ENST00000261889 FZD9O00144 591 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 GEMIN4P57678 1058 aaKnown RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 USP4Q13107 963 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 RASA2Q15283 850 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 STRIP1Q5VSL9 837 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 RFX6Q8HWS3 928 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 CCDC60Q8IWA6 550 aaPredicted RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 TUBGCP5Q96RT8 1024 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 TRIM55Q9BYV6 548 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 KRT82Q9NSB4 513 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 LRRC42Q9Y546 428 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 MAD1L1Q9Y6D9 718 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 PSMA2P25787 234 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 MYL6P60660 151 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 TMPRSS15P98073 1019 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 TFAMQ00059 246 aaKnown RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 CUL2Q13617 745 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 BAATQ14032 418 aaPredicted RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 RALGPS1Q5JS13 557 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 VWA5B1Q5TIE3 1220 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 RASIP1Q5U651 963 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 ARHGEF16Q5VV41 709 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 ALLCQ8N6M5 410 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 RBM15BQ8NDT2 890 aaKnown RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 SYTL5Q8TDW5 730 aaPredicted RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 APOL6Q9BWW8 343 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 KCNK13Q9HB14 408 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 XPNPEP1Q9NQW7 623 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 IKBKGQ9Y6K9 419 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 TRIM49D1C9J1S8 452 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 PSMG1O95456 288 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 SCYL2Q6P3W7 929 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 PAOXQ6QHF9 649 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 SH3TC2Q8TF17 1288 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 BTBD10Q9BSF8 475 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 TRIM4Q9C037 500 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 SYNCQ9H7C4 482 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 POLIQ9UNA4 740 aa13.6□□□□□ -0.23
SNX1-201ENST00000261889 CTDP1Q9Y5B0 961 aaPredicted RBP13.6□□□□□ -0.23
SNX1-201ENST00000261889 OR6B1O95007 311 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 LUC7L3O95232 432 aaKnown RBP13.59□□□□□ -0.23
SNX1-201ENST00000261889 PYGLP06737 847 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 GRIA1P42261 906 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 MKRN3Q13064 507 aaKnown RBP13.59□□□□□ -0.23
SNX1-201ENST00000261889 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.59□□□□□ -0.23
SNX1-201ENST00000261889 THNSL1Q8IYQ7 743 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 DNAJC1Q96KC8 554 aaKnown RBP13.59□□□□□ -0.23
SNX1-201ENST00000261889 SENP7Q9BQF6 1050 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 CCDC78A2IDD5 438 aa13.59□□□□□ -0.23
SNX1-201ENST00000261889 PRR5-ARHGAP8B1AHC4 643 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms