RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 BTNL10A8MVZ5 291 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 F8VP50 259 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 WDR46O15213 610 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 GSTA4O15217 222 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 NUDT17P0C025 328 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 HOXD13P35453 343 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SNRPFP62306 86 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 TNFAIP2Q03169 654 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SWT1Q5T5J6 900 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 NBPF12Q5TAG4 269 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 JADE1Q6IE81 842 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 HACE1Q8IYU2 909 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 AGAP11Q8TF27 550 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PIK3R5Q8WYR1 880 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 HOXC10Q9NYD6 342 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SOX11P35716 441 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 MMP13P45452 471 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 AP5M1Q9H0R1 490 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 DCLRE1BQ9H816 532 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SLC39A10Q9ULF5 831 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 DUOX1Q9NRD9 1551 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PSMD10O75832 226 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 DYNC1I2Q13409 638 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SGSM1Q2NKQ1 1148 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 COBLL1Q53SF7 1204 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 EP400NLQ6ZTU2 488 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 ZNF280CQ8ND82 737 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PARD3BQ8TEW8 1205 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 CNPY3Q9BT09 278 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 KCPQ6ZWJ8 1503 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PARP4Q9UKK3 1724 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 DEUP1Q05D60 604 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PID1Q7Z2X4 250 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PRPF31Q8WWY3 499 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 C12orf65Q9H3J6 166 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 MID2Q9UJV3 735 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SNX9Q9Y5X1 595 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 GAKO14976 1311 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 NWD2Q9ULI1 1742 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 ADRA1DP25100 572 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 TFDP3Q5H9I0 405 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 WASHC2DQ5SRD0 308 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 ZCCHC9Q8N567 271 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 EFCAB3Q8N7B9 438 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 GABPB2Q8TAK5 448 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SEPT1Q8WYJ6 367 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 TEX13BQ9BXU2 312 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 RNF19AQ9NV58 838 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 GGA2Q9UJY4 613 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 RP1P56715 2156 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 PDE5AO76074 875 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 RARBP10826 455 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 JAM2P57087 298 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 HYIQ5T013 277 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 KCNV1Q6PIU1 500 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 SCG3Q8WXD2 468 aaKnown RBP4.81□□□□□ -1.64
VPS13C-201ENST00000249837 USP6NLQ92738 828 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 DTNAQ9Y4J8 743 aa4.81□□□□□ -1.64
VPS13C-201ENST00000249837 C2orf71A6NGG8 1288 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ZC3H11AO75152 810 aaKnown RBP eCLIP4.8□□□□□ -1.643e-6■■■□□ 18.7
VPS13C-201ENST00000249837 UPP2O95045 317 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ITGB3P05106 788 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 VCAM1P19320 739 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CLCN3P51790 818 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 AP3M2P53677 418 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 STYK1Q6J9G0 422 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 XRRA1Q6P2D8 792 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ZDHHC24Q6UX98 284 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 DENND5BQ6ZUT9 1274 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 BZW1Q7L1Q6 419 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MICALL2Q8IY33 904 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CYP4X1Q8N118 509 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ZNF606Q8WXB4 792 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 OTUD5Q96G74 571 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MMP19Q99542 508 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SIX2Q9NPC8 291 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 N4BP2Q86UW6 1770 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 M0R2N6 131 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 FSCN2O14926 492 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SRGAP2BP0DMP2 458 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ACADSP16219 412 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PMLP29590 882 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 FAM182AQ5T1J6 154 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 LAYNQ6UX15 382 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 IPMKQ8NFU5 416 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CCDC68Q9H2F9 335 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CACNA1CQ13936 2221 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 A0A1W2PPM1 405 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EFNA5P52803 228 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KIF19Q2TAC6 998 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 DALRD3Q5D0E6 543 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 METTL23Q86XA0 190 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RIBC1Q8N443 379 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RNF139Q8WU17 664 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PCDH9Q9HC56 1237 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PXMP2Q9NR77 195 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 DNAJC16Q9Y2G8 782 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 STXBP5LQ9Y2K9 1186 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 COL1A1P02452 1464 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 GRIN2DO15399 1336 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms