RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 PPP1R10Q96QC0 940 aaKnown RBP13.97□□□□□ -0.17
SLIRP-201ENST00000238688 NUP85Q9BW27 656 aa13.97□□□□□ -0.17
SLIRP-201ENST00000238688 CLDND1Q9NY35 253 aa13.97□□□□□ -0.17
SLIRP-201ENST00000238688 ADAM22Q9P0K1 906 aa13.97□□□□□ -0.17
SLIRP-201ENST00000238688 CNOT8Q9UFF9 292 aaKnown RBP13.97□□□□□ -0.17
SLIRP-201ENST00000238688 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.97□□□□□ -0.17
SLIRP-201ENST00000238688 CCDC188H7C350 402 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 MYO1FO00160 1098 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 TBX10O75333 385 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 CSPG5O95196 566 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 EOMESO95936 686 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 CTNNA2P26232 953 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 RAD23BP54727 409 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 ADAM15Q13444 863 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 SGO2Q562F6 1265 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 CLLU1OSQ5K130 101 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 NAA35Q5VZE5 725 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 GPIHBP1Q8IV16 184 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 TMEM86AQ8N2M4 240 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 RASGEF1CQ8N431 466 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 COLGALT1Q8NBJ5 622 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 FNIP1Q8TF40 1166 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 STK32AQ8WU08 396 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 ZMAT2Q96NC0 199 aaKnown RBP13.96□□□□□ -0.17
SLIRP-201ENST00000238688 NCAPGQ9BPX3 1015 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 PARP2Q9UGN5 583 aa13.96□□□□□ -0.17
SLIRP-201ENST00000238688 PGRMC1O00264 195 aaKnown RBP13.95□□□□□ -0.18
SLIRP-201ENST00000238688 FTCDO95954 541 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 THP07101 528 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 WEE2P0C1S8 567 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 CD58P19256 250 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 ERVFC1P60507 584 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 ACAP1Q15027 740 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 BRD3Q15059 726 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 ARHGAP17Q68EM7 881 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 LCLAT1Q6UWP7 414 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 SLC4A11Q8NBS3 891 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 C3orf20Q8ND61 904 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 ARHGEF26Q96DR7 871 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 CYFIP2Q96F07 1278 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 TNIP3Q96KP6 325 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 OSGEPQ9NPF4 335 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 C11orf16Q9NQ32 467 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.95□□□□□ -0.186e-11■■■■■ 34.8
SLIRP-201ENST00000238688 PUF60Q9UHX1 559 aaKnown RBP13.95□□□□□ -0.18
SLIRP-201ENST00000238688 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.95□□□□□ -0.18
SLIRP-201ENST00000238688 ALG6Q9Y672 507 aa13.95□□□□□ -0.18
SLIRP-201ENST00000238688 CCDC151A5D8V7 595 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 KPNA7A9QM74 516 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 FSCN2O14926 492 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 PSTPIP1O43586 416 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 NCK2O43639 380 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 ERLIN1O75477 346 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 FGF18O76093 207 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 GLP2RO95838 553 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 CTNNA1P35221 906 aaKnown RBP13.94□□□□□ -0.18
SLIRP-201ENST00000238688 SCNN1AP37088 669 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 GABRB2P47870 512 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 GRIK3Q13003 919 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 ZNF268Q14587 947 aaPredicted RBP13.94□□□□□ -0.18
SLIRP-201ENST00000238688 ERCC6LQ2NKX8 1250 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 LRRC38Q5VT99 294 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 WDR93Q6P2C0 686 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 SCARA5Q6ZMJ2 495 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 ERICH1Q86X53 443 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 ZDHHC17Q8IUH5 632 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 CRYBG2Q8N1P7 616 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 NIPA2Q8N8Q9 360 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 APPL2Q8NEU8 664 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 SPATA4Q8NEY3 305 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 IPO4Q8TEX9 1081 aaKnown RBP13.94□□□□□ -0.18
SLIRP-201ENST00000238688 WHAMMQ8TF30 809 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 MAIP1Q8WWC4 291 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.94□□□□□ -0.18
SLIRP-201ENST00000238688 MSLNLQ96KJ4 702 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 RUNDC3BQ96NL0 473 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 MMS19Q96T76 1030 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 IGFLR1Q9H665 355 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 SMYD3Q9H7B4 428 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 CLEC1BQ9P126 229 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 IP6K2Q9UHH9 426 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 RAPGEFL1Q9UHV5 662 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 RAB21Q9UL25 225 aa13.94□□□□□ -0.18
SLIRP-201ENST00000238688 GOLGA6L10A0A0M3HER8 536 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 C19orf67A6NJJ6 358 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 MEIS3P2A8K0S8 358 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 O00370 1275 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 KCNK3O14649 394 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 MBTPS2O43462 519 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 ATP8B1O43520 1251 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 HUS1O60921 280 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 CD19P15391 556 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 H2AFXP16104 143 aaPredicted RBP13.93□□□□□ -0.18
SLIRP-201ENST00000238688 DESP17661 470 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 WARSP23381 471 aaKnown RBP13.93□□□□□ -0.18
SLIRP-201ENST00000238688 PBX3P40426 434 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 UBE3AQ05086 875 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 PIGHQ14442 188 aaPredicted RBP13.93□□□□□ -0.18
SLIRP-201ENST00000238688 ELF2Q15723 593 aa13.93□□□□□ -0.18
SLIRP-201ENST00000238688 PUS10Q3MIT2 529 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms