RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PPP1R15BQ5SWA1 713 aa13□□□□□ -0.33
NUP88-201ENST00000225696 DNAJC24Q6P3W2 148 aa13□□□□□ -0.33
NUP88-201ENST00000225696 TRIM72Q6ZMU5 477 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PPIL6Q8IXY8 311 aa13□□□□□ -0.33
NUP88-201ENST00000225696 TMEM130Q8N3G9 435 aa13□□□□□ -0.33
NUP88-201ENST00000225696 FAM71DQ8N9W8 422 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ATP11CQ8NB49 1132 aa13□□□□□ -0.33
NUP88-201ENST00000225696 TFAP2BQ92481 460 aa13□□□□□ -0.33
NUP88-201ENST00000225696 CLPTM1LQ96KA5 538 aa13□□□□□ -0.33
NUP88-201ENST00000225696 TSC22D3Q99576 134 aa13□□□□□ -0.33
NUP88-201ENST00000225696 VPS11Q9H270 941 aa13□□□□□ -0.33
NUP88-201ENST00000225696 SSU72Q9NP77 194 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 STOML1Q9UBI4 398 aa13□□□□□ -0.33
NUP88-201ENST00000225696 CNTN6Q9UQ52 1028 aa13□□□□□ -0.33
NUP88-201ENST00000225696 C2CD2Q9Y426 696 aa13□□□□□ -0.33
NUP88-201ENST00000225696 WDR81Q562E7 1941 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ATP2A1O14983 1001 aa13□□□□□ -0.33
NUP88-201ENST00000225696 LPXNO60711 386 aa13□□□□□ -0.33
NUP88-201ENST00000225696 DHRS4L1P0CG22 281 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PYGBP11216 843 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ZNF132P52740 706 aa13□□□□□ -0.33
NUP88-201ENST00000225696 HIRAP54198 1017 aaPredicted RBP13□□□□□ -0.33
NUP88-201ENST00000225696 CDK16Q00536 496 aa13□□□□□ -0.33
NUP88-201ENST00000225696 KRT76Q01546 638 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ZBTB16Q05516 673 aa13□□□□□ -0.33
NUP88-201ENST00000225696 MCL1Q07820 350 aa13□□□□□ -0.33
NUP88-201ENST00000225696 THOC5Q13769 683 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 LRRC74BQ6ZQY2 392 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PRPF39Q86UA1 669 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 TREML1Q86YW5 311 aa13□□□□□ -0.33
NUP88-201ENST00000225696 PALM2Q8IXS6 379 aa13□□□□□ -0.33
NUP88-201ENST00000225696 JOSD2Q8TAC2 188 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ZNF398Q8TD17 642 aa13□□□□□ -0.33
NUP88-201ENST00000225696 SH3TC2Q8TF17 1288 aa13□□□□□ -0.33
NUP88-201ENST00000225696 ZNF526Q8TF50 670 aaPredicted RBP13□□□□□ -0.33
NUP88-201ENST00000225696 IFT43Q96FT9 208 aa13□□□□□ -0.33
NUP88-201ENST00000225696 DDX50Q9BQ39 737 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 TARS2Q9BW92 718 aaKnown RBP13□□□□□ -0.33
NUP88-201ENST00000225696 RGS17Q9UGC6 210 aaPredicted RBP13□□□□□ -0.33
NUP88-201ENST00000225696 CNTNAP2Q9UHC6 1331 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 FCHO1O14526 889 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 KIF3CO14782 793 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 RAD17O75943 681 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 NPTXRO95502 500 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 SFNP31947 248 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 ELK3P41970 407 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 NEK3P51956 506 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 SLC34A1Q06495 639 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 NCOA4Q13772 614 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 LBRQ14739 615 aaKnown RBP12.99□□□□□ -0.33
NUP88-201ENST00000225696 SGSM1Q2NKQ1 1148 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 KBTBD12Q3ZCT8 623 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 MTERF2Q49AM1 385 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 GPAT2Q6NUI2 795 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 ZC3H18Q86VM9 953 aaKnown RBP12.99□□□□□ -0.33
NUP88-201ENST00000225696 MCF2L2Q86YR7 1114 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 VPS52Q8N1B4 723 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 SLC38A10Q9HBR0 1119 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 CYP26B1Q9NR63 512 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 PAPOLBQ9NRJ5 636 aaKnown RBP12.99□□□□□ -0.33
NUP88-201ENST00000225696 FBXO40Q9UH90 709 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 CYTH4Q9UIA0 394 aa12.99□□□□□ -0.33
NUP88-201ENST00000225696 XPO7Q9UIA9 1087 aaKnown RBP12.99□□□□□ -0.33
NUP88-201ENST00000225696 TCRBV9S1A1TA0A576 114 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 E7ESA3 106 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 TM9SF1O15321 606 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 MT-ND3P03897 115 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 WEE2P0C1S8 567 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 RARBP10826 455 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 TNFSF9P41273 254 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 PRKCEQ02156 737 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 SLC25A11Q02978 314 aaKnown RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 PTK7Q13308 1070 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 LRRC38Q5VT99 294 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 ARHGEF16Q5VV41 709 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 SLC30A9Q6PML9 568 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 CCNJLQ8IV13 435 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 NLGN1Q8N2Q7 840 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 EMC1Q8N766 993 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 FLAD1Q8NFF5 587 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 MCUR1Q96AQ8 359 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 OXNAD1Q96HP4 312 aaPredicted RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 PPP1R12CQ9BZL4 782 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 TMOD2Q9NZR1 351 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 CNTN3Q9P232 1028 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 RPL26L1Q9UNX3 145 aaKnown RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 AGTPBP1Q9UPW5 1226 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 COL2A1P02458 1487 aaPredicted RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 CYB561D2O14569 222 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 DNAJC6O75061 913 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 LRCH4O75427 683 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 ESRRAP11474 423 aaPredicted RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 YY1P25490 414 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 PAPOLAP51003 745 aaKnown RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 BASP1P80723 227 aaKnown RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 OCRLQ01968 901 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 GHRHRQ02643 423 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 BIRC2Q13490 618 aa12.98□□□□□ -0.33
NUP88-201ENST00000225696 BAATQ14032 418 aaPredicted RBP12.98□□□□□ -0.33
NUP88-201ENST00000225696 RAB6CQ53S08 254 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms