RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	IPT1	P38954	527 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	RPL13B	P40212	199 aa	Known RBP	0.83	□□□□□ -2.28
VPS55	YJR044C	BRP1	P53194	125 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	SAE3	P89114	91 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	CWC27	Q02770	301 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	YLR162W	Q06235	118 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	LDB18	Q07887	179 aa		0.83	□□□□□ -2.28
VPS55	YJR044C	FCF2	Q12035	217 aa	Predicted RBP	0.83	□□□□□ -2.28
VPS55	YJR044C	RPL13A	Q12690	199 aa	Predicted RBP	0.83	□□□□□ -2.28
VPS55	YJR044C	PAU21	P0CE86	164 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	PAU22	P0CE87	164 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	NMT1	P14743	455 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	YCL042W	P25572	119 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	YCR099C	P25657	155 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	RPB11	P38902	120 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	YGL230C	P53074	147 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	AVO2	Q04749	426 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	TVP18	Q04767	167 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	GPI11	Q06636	219 aa		0.82	□□□□□ -2.28
VPS55	YJR044C	BUD4	P47136	1447 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	PFY1	P07274	126 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	YJL197C-A	P0C5P0	93 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	HAP3	P13434	144 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	FPR1	P20081	114 aa	Known RBP	0.81	□□□□□ -2.28
VPS55	YJR044C	YGL010W	P25338	174 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	UGX2	P32772	223 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	YHL042W	P38729	150 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	YAL064W	P39711	94 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	DCV1	P43595	202 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	YAE1	P47118	141 aa	Predicted RBP	0.81	□□□□□ -2.28
VPS55	YJR044C	RPS12	P48589	143 aa	Known RBP	0.81	□□□□□ -2.28
VPS55	YJR044C	SED1	Q01589	338 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	RUB1	Q03919	77 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	GPI19	Q04082	140 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	SWC7	Q06707	132 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	YOR289W	Q12012	251 aa	Predicted RBP	0.81	□□□□□ -2.28
VPS55	YJR044C	RTR2	Q12378	196 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	GTT2	Q12390	233 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	HFA1	P32874	2273 aa		0.81	□□□□□ -2.28
VPS55	YJR044C	GEA1	P47102	1408 aa	Predicted RBP	0.81	□□□□□ -2.28
VPS55	YJR044C	YER039C-A	P0CD97	72 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	UTP11	P34247	250 aa	Predicted RBP	0.8	□□□□□ -2.28
VPS55	YJR044C	YBR090C	P38253	122 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	HSP10	P38910	106 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	ERV14	P53173	138 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	FIT1	Q04433	528 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	YLR296W	Q05898	108 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	CMC4	Q3E7A9	73 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	YPK9	Q12697	1472 aa		0.8	□□□□□ -2.28
VPS55	YJR044C	RTC6	O14464	93 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	RPL33A	P05744	107 aa	Known RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	YHR213W	P0CI67	198 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	SEC59	P20048	519 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	LHP1	P33399	275 aa	Known RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	YKL044W	P36092	106 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	MRPL11	P36521	249 aa	Predicted RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	TRS20	P38334	175 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	AIM18	P38884	321 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YEL008W	P40001	126 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YER137C	P40083	148 aa	Known RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	GTT1	P40582	234 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	GNA1	P43577	159 aa	Predicted RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	YFR035C	P43608	114 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YJL009W	P47078	108 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	BAT2	P47176	376 aa	Known RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	YCL001W-A	P87012	153 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YIL014C-A	Q02598	104 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YPL067C	Q02754	198 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	YMR252C	Q04814	134 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	TAR1	Q8TGM6	124 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.79	□□□□□ -2.28
VPS55	YJR044C	REV3	P14284	1504 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	BPT1	P14772	1559 aa		0.79	□□□□□ -2.28
VPS55	YJR044C	RPL36B	O14455	100 aa	Known RBP	0.78	□□□□□ -2.28
VPS55	YJR044C	RPL36A	P05745	100 aa	Predicted RBP	0.78	□□□□□ -2.28
VPS55	YJR044C	UBC5	P15732	148 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	FUN14	P18411	198 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	YBR027C	P38220	110 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	LST8	P41318	303 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	YFL051C	P43552	160 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	IRC21	Q04772	201 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	FYV7	Q12247	151 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	COA3	Q3E7B2	85 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	YLR365W	Q7LIF2	110 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	BEM2	P39960	2167 aa	Known RBP	0.78	□□□□□ -2.28
VPS55	YJR044C	PDR11	P40550	1411 aa		0.78	□□□□□ -2.28
VPS55	YJR044C	GEA2	P39993	1459 aa	Known RBP	0.78	□□□□□ -2.28
VPS55	YJR044C	GSC2	P40989	1895 aa		0.78	□□□□□ -2.29
VPS55	YJR044C	YGL014C-A	P0C5N1	53 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YHR212W-A	P0CX91	67 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	EMP24	P32803	203 aa	Known RBP	0.77	□□□□□ -2.29
VPS55	YJR044C	MRPL15	P36523	253 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YBR242W	P38331	238 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YAR029W	P39549	74 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YAR064W	P39563	99 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YER187W	P40102	141 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	VMA21	P41806	77 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	PAM16	P42949	149 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	HUR1	P45820	110 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YGL149W	P53116	101 aa		0.77	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 189.4 ms