RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C ATP19P81451 68 aa9.41□□□□□ -0.9
SHU1YHL006C CRC1Q12289 327 aa9.41□□□□□ -0.9
SHU1YHL006C TIM22Q12328 207 aa9.41□□□□□ -0.9
SHU1YHL006C COQ3P27680 312 aa9.4□□□□□ -0.9
SHU1YHL006C PGD1P40356 397 aa9.4□□□□□ -0.9
SHU1YHL006C COA4Q05809 96 aa9.4□□□□□ -0.9
SHU1YHL006C FMP16Q12497 93 aa9.4□□□□□ -0.9
SHU1YHL006C YPR053CQ6Q5F3 151 aa9.4□□□□□ -0.9
SHU1YHL006C YNL217WP40152 326 aa9.39□□□□□ -0.91
SHU1YHL006C COX16P47081 118 aa9.39□□□□□ -0.91
SHU1YHL006C AIM34Q03673 198 aa9.39□□□□□ -0.91
SHU1YHL006C YOR105WQ08504 108 aa9.39□□□□□ -0.91
SHU1YHL006C TY1A-NL2Q12470 440 aa9.39□□□□□ -0.91
SHU1YHL006C MRPL28P36527 147 aa9.38□□□□□ -0.91
SHU1YHL006C HIT1P46973 164 aa9.38□□□□□ -0.91
SHU1YHL006C POF1P25576 258 aa9.37□□□□□ -0.91
SHU1YHL006C DIA1P54005 336 aa9.37□□□□□ -0.91
SHU1YHL006C RPL12AP0CX53 165 aaKnown RBP9.36□□□□□ -0.91
SHU1YHL006C RPL12BP0CX54 165 aa9.36□□□□□ -0.91
SHU1YHL006C SRP21P32342 167 aa9.36□□□□□ -0.91
SHU1YHL006C UPS3Q04006 179 aa9.36□□□□□ -0.91
SHU1YHL006C ORM2Q06144 216 aa9.36□□□□□ -0.91
SHU1YHL006C PCC1Q3E833 88 aa9.36□□□□□ -0.91
SHU1YHL006C TIR1P10863 254 aa9.35□□□□□ -0.91
SHU1YHL006C SPC1P46965 94 aa9.35□□□□□ -0.91
SHU1YHL006C YDL183CP48569 320 aa9.35□□□□□ -0.91
SHU1YHL006C UBC12P52491 188 aa9.35□□□□□ -0.91
SHU1YHL006C TIM21P53220 239 aa9.35□□□□□ -0.91
SHU1YHL006C ATP14Q12349 124 aa9.35□□□□□ -0.91
SHU1YHL006C VMA9Q3E7B6 73 aa9.35□□□□□ -0.91
SHU1YHL006C YPT53P36019 220 aa9.34□□□□□ -0.91
SHU1YHL006C NAT3Q06504 195 aa9.34□□□□□ -0.91
SHU1YHL006C SRP14P38985 146 aa9.33□□□□□ -0.92
SHU1YHL006C YNL200CP40165 246 aaKnown RBP9.33□□□□□ -0.92
SHU1YHL006C YLR042CQ07990 161 aa9.33□□□□□ -0.92
SHU1YHL006C YCR023CP25351 611 aa9.32□□□□□ -0.92
SHU1YHL006C YGR026WP53217 278 aa9.32□□□□□ -0.92
SHU1YHL006C YLL066W-BQ8TGJ7 56 aa9.32□□□□□ -0.92
SHU1YHL006C VMA7P39111 118 aa9.31□□□□□ -0.92
SHU1YHL006C DAD3P69850 94 aa9.31□□□□□ -0.92
SHU1YHL006C PBA1Q05778 276 aa9.31□□□□□ -0.92
SHU1YHL006C YCL001W-BQ96VH2 84 aa9.31□□□□□ -0.92
SHU1YHL006C PHS1P40857 217 aa9.3□□□□□ -0.92
SHU1YHL006C YGR017WP53210 297 aa9.3□□□□□ -0.92
SHU1YHL006C Q0142Q9ZZW4 58 aa9.3□□□□□ -0.92
SHU1YHL006C MRPL31P14063 131 aaPredicted RBP9.29□□□□□ -0.92
SHU1YHL006C SAP30P38429 201 aa9.29□□□□□ -0.92
SHU1YHL006C MOG1P47123 218 aa9.29□□□□□ -0.92
SHU1YHL006C MGA1P53050 456 aa9.29□□□□□ -0.92
SHU1YHL006C DGA1Q08650 418 aa9.29□□□□□ -0.92
SHU1YHL006C SMT3Q12306 101 aaKnown RBP9.29□□□□□ -0.92
SHU1YHL006C ANB1P19211 157 aa9.28□□□□□ -0.92
SHU1YHL006C KTI12P34253 313 aaKnown RBP9.28□□□□□ -0.92
SHU1YHL006C SUR2P38992 349 aa9.28□□□□□ -0.92
SHU1YHL006C DPP1Q05521 289 aa9.28□□□□□ -0.92
SHU1YHL006C QRI5P32344 111 aa9.27□□□□□ -0.93
SHU1YHL006C BNS1P50084 137 aa9.27□□□□□ -0.93
SHU1YHL006C SEC59P20048 519 aa9.26□□□□□ -0.93
SHU1YHL006C RPB11P38902 120 aa9.26□□□□□ -0.93
SHU1YHL006C FMP49A0A023PZB3 126 aa9.25□□□□□ -0.93
SHU1YHL006C YJL028WP47062 111 aa9.25□□□□□ -0.93
SHU1YHL006C GIM5Q04493 163 aa9.25□□□□□ -0.93
SHU1YHL006C DXO1Q06349 442 aa9.25□□□□□ -0.93
SHU1YHL006C ATG33Q06485 197 aa9.25□□□□□ -0.93
SHU1YHL006C DCN1Q12395 269 aa9.25□□□□□ -0.93
SHU1YHL006C TY1A-DR3Q12441 440 aa9.25□□□□□ -0.93
SHU1YHL006C RPL11AP0C0W9 174 aaKnown RBP9.24□□□□□ -0.93
SHU1YHL006C YHR140WP38842 239 aa9.24□□□□□ -0.93
SHU1YHL006C CDC40P40968 455 aaPredicted RBP9.24□□□□□ -0.93
SHU1YHL006C LCL2Q08045 131 aa9.24□□□□□ -0.93
SHU1YHL006C CSM4Q08955 156 aa9.24□□□□□ -0.93
SHU1YHL006C RPL11BQ3E757 174 aaPredicted RBP9.24□□□□□ -0.93
SHU1YHL006C RTC6O14464 93 aa9.22□□□□□ -0.93
SHU1YHL006C LDS1P31379 325 aa9.22□□□□□ -0.93
SHU1YHL006C VTS1Q08831 523 aaKnown RBP RIP-Chip data9.22□□□□□ -0.93not detected
SHU1YHL006C RPL33AP05744 107 aaKnown RBP9.21□□□□□ -0.94
SHU1YHL006C RPL33BP41056 107 aaKnown RBP9.21□□□□□ -0.94
SHU1YHL006C CUP2P15315 225 aa9.2□□□□□ -0.94
SHU1YHL006C SRB6P32570 121 aa9.2□□□□□ -0.94
SHU1YHL006C GPI19Q04082 140 aa9.2□□□□□ -0.94
SHU1YHL006C FRS1P15624 595 aaKnown RBP9.19□□□□□ -0.94
SHU1YHL006C UBC5P15732 148 aa9.19□□□□□ -0.94
SHU1YHL006C MIX23P38162 196 aa9.19□□□□□ -0.94
SHU1YHL006C TEM1P38987 245 aa9.19□□□□□ -0.94
SHU1YHL006C THG1P53215 237 aaKnown RBP9.19□□□□□ -0.94
SHU1YHL006C ARC18Q05933 178 aaKnown RBP9.19□□□□□ -0.94
SHU1YHL006C RRT15Q3E811 62 aa9.19□□□□□ -0.94
SHU1YHL006C DIF1O13577 133 aa9.18□□□□□ -0.94
SHU1YHL006C RPL27AP0C2H6 136 aaKnown RBP9.18□□□□□ -0.94
SHU1YHL006C LAC1P28496 418 aa9.18□□□□□ -0.94
SHU1YHL006C PMP3P87284 55 aa9.17□□□□□ -0.94
SHU1YHL006C TY1A-DR4O74302 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-AP0CX57 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-PR1P0CX58 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-ORP0CX59 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-PR2P0CX60 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-DR5P0CX65 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-ER2P0CX66 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-GR3P0CX67 440 aa9.16□□□□□ -0.94
SHU1YHL006C TY1A-LR1P0CX68 440 aa9.16□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 84.8 ms