RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	AQR1	P53943	586 aa		4.13	□□□□□ -1.75
CDC4	YFL009W	YDR102C	Q03864	110 aa		4.13	□□□□□ -1.75
CDC4	YFL009W	IRC19	Q07843	230 aa		4.13	□□□□□ -1.75
CDC4	YFL009W	YOL118C	Q08259	102 aa		4.13	□□□□□ -1.75
CDC4	YFL009W	YOR376W	Q08900	122 aa		4.13	□□□□□ -1.75
CDC4	YFL009W	APS1	P35181	156 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	SWD3	P38123	315 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YIL059C	P40520	121 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	MRX11	Q03079	207 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YOR186W	Q08560	144 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	FIT3	Q08907	204 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YPS3	Q12303	508 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YOR192C-C	Q3E736	78 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	ENV10	Q99382	181 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	RPL30	P14120	105 aa	Known RBP	4.12	□□□□□ -1.75
CDC4	YFL009W	YCR085W	P25650	117 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	SDS23	P53172	527 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	WSC2	P53832	503 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YDR042C	Q03205	200 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	RAV2	Q03956	351 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	DFM1	Q12743	341 aa	Known RBP	4.12	□□□□□ -1.75
CDC4	YFL009W	YAL063C-A	Q3E791	96 aa		4.12	□□□□□ -1.75
CDC4	YFL009W	YLR302C	O13544	120 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	TIR2	P33890	251 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	YHR173C	P38864	112 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	LYS1	P38998	373 aa	RIP-Chip data	4.11	□□□□□ -1.75	not detected
CDC4	YFL009W	SUN4	P53616	420 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	YNR048W	P53740	393 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	RPL23A	P0CX41	137 aa	Known RBP	4.11	□□□□□ -1.75
CDC4	YFL009W	RPL23B	P0CX42	137 aa	Known RBP	4.11	□□□□□ -1.75
CDC4	YFL009W	RPS2	P25443	254 aa	Known RBP	4.11	□□□□□ -1.75
CDC4	YFL009W	PAU7	P39545	55 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	EGT2	P42835	1041 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	YPI1	P43587	155 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	YFR045W	P43617	309 aa		4.11	□□□□□ -1.75
CDC4	YFL009W	INO2	P26798	304 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	CSH1	P38287	376 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	SBH1	P52870	82 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	UPS1	Q05776	175 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	YDR119W-A	Q2V2P9	66 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	KTI11	Q3E840	82 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	ECM12	O13529	151 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	ARF1	P11076	181 aa	Known RBP	4.1	□□□□□ -1.75
CDC4	YFL009W	YPS1	P32329	569 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	MID2	P36027	376 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	YGR039W	P53225	103 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	TRS23	Q03784	219 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	YOR292C	Q08743	309 aa		4.1	□□□□□ -1.75
CDC4	YFL009W	YMR316C-A	I2HB70	103 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	MXR2	P25566	168 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	HSP150	P32478	413 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	YIP1	P53039	248 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	CAX4	P53223	239 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	RHO5	P53879	331 aa	Known RBP	4.09	□□□□□ -1.75
CDC4	YFL009W	AIM11	P87275	137 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	TIM18	Q08749	192 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	YHR214C-E	Q8TGK0	99 aa		4.09	□□□□□ -1.75
CDC4	YFL009W	CDC39	P25655	2108 aa	Known RBP	4.09	□□□□□ -1.76
CDC4	YFL009W	HUA1	P40325	198 aa		4.09	□□□□□ -1.76
CDC4	YFL009W	CWP2	P43497	92 aa		4.09	□□□□□ -1.76
CDC4	YFL009W	RAF1	Q06891	181 aa		4.09	□□□□□ -1.76
CDC4	YFL009W	DAP1	Q12091	152 aa		4.09	□□□□□ -1.76
CDC4	YFL009W	MRPL23	Q12487	163 aa	Predicted RBP	4.09	□□□□□ -1.76
CDC4	YFL009W	YAL064W-B	O13512	126 aa		4.08	□□□□□ -1.76
CDC4	YFL009W	YSF3	P0C074	85 aa	Predicted RBP	4.08	□□□□□ -1.76
CDC4	YFL009W	MRS3	P10566	314 aa		4.08	□□□□□ -1.76
CDC4	YFL009W	RRG8	Q06109	277 aa		4.08	□□□□□ -1.76
CDC4	YFL009W	LSM6	Q06406	86 aa	Known RBP	4.08	□□□□□ -1.76
CDC4	YFL009W	MRPL31	P14063	131 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC4	YFL009W	YIL014C-A	Q02598	104 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	API2	Q04413	109 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	YOR097C	Q12274	175 aa	Predicted RBP	4.07	□□□□□ -1.76
CDC4	YFL009W	NAG1	Q8TGN9	163 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	VPS13	Q07878	3144 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	HSP12	P22943	109 aa	Known RBP	4.07	□□□□□ -1.76
CDC4	YFL009W	FPR2	P32472	135 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	TOM6	P33448	61 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	MED6	P38782	295 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	LCB3	P47013	409 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	IRC25	Q07951	179 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	RDL2	Q08742	149 aa	Known RBP	4.07	□□□□□ -1.76
CDC4	YFL009W	FCY1	Q12178	158 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	USB1	Q12208	290 aa	Known RBP	4.07	□□□□□ -1.76
CDC4	YFL009W	YER175W-A	Q8TGU4	54 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	YPL229W	Q99395	206 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	BLM10	P43583	2143 aa		4.07	□□□□□ -1.76
CDC4	YFL009W	RPS27A	P35997	82 aa	Known RBP	4.06	□□□□□ -1.76
CDC4	YFL009W	SFT2	P38166	215 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	RPS27B	P38711	82 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	ERG28	P40030	148 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	YNL217W	P40152	326 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	BOL1	Q3E793	110 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	YBL112C	Q3E7Y4	105 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	FZF1	P32805	299 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	NRG2	P38082	220 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	YHL042W	P38729	150 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	YER079W	P40052	210 aa	Known RBP	4.06	□□□□□ -1.76
CDC4	YFL009W	SKI6	P46948	246 aa	Predicted RBP	4.06	□□□□□ -1.76
CDC4	YFL009W	MRPL19	P53875	158 aa		4.06	□□□□□ -1.76
CDC4	YFL009W	MSA1	Q08471	629 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 51.4 ms