RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C SUI1P32911 108 aaKnown RBP0.54□□□□□ -2.32
RUB1YDR139C SFT2P38166 215 aa0.54□□□□□ -2.32
RUB1YDR139C UTP11P34247 250 aaPredicted RBP0.53□□□□□ -2.32
RUB1YDR139C LSM8P47093 109 aaKnown RBP0.53□□□□□ -2.32
RUB1YDR139C YPL067CQ02754 198 aa0.53□□□□□ -2.32
RUB1YDR139C YOR385WQ08909 290 aa0.53□□□□□ -2.32
RUB1YDR139C PET54P10834 293 aa0.52□□□□□ -2.33
RUB1YDR139C SPG1P50088 95 aa0.52□□□□□ -2.33
RUB1YDR139C EMC4P53073 190 aa0.52□□□□□ -2.33
RUB1YDR139C PFY1P07274 126 aa0.51□□□□□ -2.33
RUB1YDR139C MRPL44P19956 98 aa0.51□□□□□ -2.33
RUB1YDR139C MOG1P47123 218 aa0.51□□□□□ -2.33
RUB1YDR139C YOR1P53049 1477 aa0.51□□□□□ -2.33
RUB1YDR139C YDR366CP87287 132 aa0.51□□□□□ -2.33
RUB1YDR139C YBR013CP38215 129 aa0.5□□□□□ -2.33
RUB1YDR139C AIM4P38305 123 aaPredicted RBP0.49□□□□□ -2.33
RUB1YDR139C MIC27P50945 234 aa0.49□□□□□ -2.33
RUB1YDR139C BRP1P53194 125 aa0.49□□□□□ -2.33
RUB1YDR139C YMR320WQ04897 101 aa0.49□□□□□ -2.33
RUB1YDR139C GSC2P40989 1895 aa0.48□□□□□ -2.33
RUB1YDR139C RPS1AP33442 255 aaKnown RBP0.48□□□□□ -2.33
RUB1YDR139C YGL149WP53116 101 aa0.48□□□□□ -2.33
RUB1YDR139C SMD2Q06217 110 aaKnown RBP0.47□□□□□ -2.33
RUB1YDR139C MRPL11P36521 249 aaPredicted RBP0.46□□□□□ -2.34
RUB1YDR139C YLR296WQ05898 108 aa0.46□□□□□ -2.34
RUB1YDR139C LAA1P39526 2014 aa0.45□□□□□ -2.34
RUB1YDR139C YSF3P0C074 85 aaPredicted RBP0.45□□□□□ -2.34
RUB1YDR139C HHO1P53551 258 aa0.45□□□□□ -2.34
RUB1YDR139C GTT2Q12390 233 aa0.45□□□□□ -2.34
RUB1YDR139C MED11Q99278 115 aa0.45□□□□□ -2.34
RUB1YDR139C TY4B-JP47024 1803 aa0.44□□□□□ -2.34
RUB1YDR139C QCR10P37299 77 aa0.44□□□□□ -2.34
RUB1YDR139C YGR039WP53225 103 aa0.44□□□□□ -2.34
RUB1YDR139C COF1Q03048 143 aaKnown RBP0.44□□□□□ -2.34
RUB1YDR139C HAP3P13434 144 aa0.43□□□□□ -2.34
RUB1YDR139C ARC19P33204 171 aaKnown RBP0.43□□□□□ -2.34
RUB1YDR139C LDB18Q07887 179 aa0.43□□□□□ -2.34
RUB1YDR139C SPC3Q12133 184 aa0.43□□□□□ -2.34
RUB1YDR139C ATP14Q12349 124 aa0.43□□□□□ -2.34
RUB1YDR139C SNT2P53127 1403 aa0.42□□□□□ -2.34
RUB1YDR139C MRPL31P14063 131 aaPredicted RBP0.42□□□□□ -2.34
RUB1YDR139C RBL2P48606 106 aaKnown RBP0.42□□□□□ -2.34
RUB1YDR139C RPC19P28000 142 aaKnown RBP0.41□□□□□ -2.34
RUB1YDR139C SDH7Q04401 133 aa0.41□□□□□ -2.34
RUB1YDR139C RTC6O14464 93 aa0.4□□□□□ -2.35
RUB1YDR139C HSP10P38910 106 aa0.4□□□□□ -2.35
RUB1YDR139C YLR194CQ05777 254 aa0.4□□□□□ -2.35
RUB1YDR139C GSP1P32835 219 aaKnown RBP0.39□□□□□ -2.35
RUB1YDR139C AIM18P38884 321 aa0.39□□□□□ -2.35
RUB1YDR139C POR2P40478 281 aa0.39□□□□□ -2.35
RUB1YDR139C EFM5P53200 248 aaKnown RBP0.39□□□□□ -2.35
RUB1YDR139C YRF1-3P0CX14 1859 aa0.38□□□□□ -2.35
RUB1YDR139C YRF1-7P0CX15 1859 aa0.38□□□□□ -2.35
RUB1YDR139C PAU21P0CE86 164 aa0.38□□□□□ -2.35
RUB1YDR139C PAU22P0CE87 164 aa0.38□□□□□ -2.35
RUB1YDR139C YCR050CP25630 102 aa0.38□□□□□ -2.35
RUB1YDR139C PRS3P38689 320 aaKnown RBP0.38□□□□□ -2.35
RUB1YDR139C YAL064WP39711 94 aa0.38□□□□□ -2.35
RUB1YDR139C HPM1P40481 377 aa0.38□□□□□ -2.35
RUB1YDR139C FCF2Q12035 217 aaPredicted RBP0.37□□□□□ -2.35
RUB1YDR139C SRX1P36077 127 aa0.36□□□□□ -2.35
RUB1YDR139C RPL14AP36105 138 aaKnown RBP0.35□□□□□ -2.35
RUB1YDR139C YAP3P38749 330 aa0.35□□□□□ -2.35
RUB1YDR139C RPL14BP38754 138 aaKnown RBP0.35□□□□□ -2.35
RUB1YDR139C ELC1Q03071 99 aa0.35□□□□□ -2.35
RUB1YDR139C TY1B-HO13535 1793 aa0.34□□□□□ -2.35
RUB1YDR139C SNF2P22082 1703 aa0.34□□□□□ -2.36
RUB1YDR139C EMP24P32803 203 aaKnown RBP0.34□□□□□ -2.36
RUB1YDR139C RPS29BP41058 56 aaKnown RBP0.34□□□□□ -2.36
RUB1YDR139C YJR128WP47162 119 aa0.34□□□□□ -2.36
RUB1YDR139C RPL36BO14455 100 aaKnown RBP0.32□□□□□ -2.36
RUB1YDR139C RPL36AP05745 100 aaPredicted RBP0.32□□□□□ -2.36
RUB1YDR139C YIL163CP40448 117 aa0.32□□□□□ -2.36
RUB1YDR139C YGR017WP53210 297 aa0.3□□□□□ -2.36
RUB1YDR139C URA2P07259 2214 aaKnown RBP0.29□□□□□ -2.36
RUB1YDR139C SUA7P29055 345 aaPredicted RBP0.29□□□□□ -2.36
RUB1YDR139C TVP18Q04767 167 aa0.29□□□□□ -2.36
RUB1YDR139C PHS1P40857 217 aa0.28□□□□□ -2.36
RUB1YDR139C YFR035CP43608 114 aa0.28□□□□□ -2.36
RUB1YDR139C MPC1P53157 130 aaKnown RBP0.28□□□□□ -2.36
RUB1YDR139C ARL3Q02804 198 aa0.28□□□□□ -2.36
RUB1YDR139C HPA2Q06592 156 aa0.28□□□□□ -2.36
RUB1YDR139C ENV10Q99382 181 aa0.28□□□□□ -2.36
RUB1YDR139C ICS3P47034 131 aa0.27□□□□□ -2.37
RUB1YDR139C YGR240C-AQ3E786 66 aa0.26□□□□□ -2.37
RUB1YDR139C YNL277W-AQ3E7Z0 62 aa0.26□□□□□ -2.37
RUB1YDR139C TRM732Q03496 1420 aa0.25□□□□□ -2.37
RUB1YDR139C QCR6P00127 147 aa0.25□□□□□ -2.37
RUB1YDR139C AUA1P32450 94 aa0.25□□□□□ -2.37
RUB1YDR139C CSN9Q03981 162 aa0.25□□□□□ -2.37
RUB1YDR139C OCA6Q12454 224 aa0.25□□□□□ -2.37
RUB1YDR139C TRS20P38334 175 aa0.24□□□□□ -2.37
RUB1YDR139C ERV14P53173 138 aa0.24□□□□□ -2.37
RUB1YDR139C BLM10P43583 2143 aa0.23□□□□□ -2.37
RUB1YDR139C LCL1Q02786 101 aa0.23□□□□□ -2.37
RUB1YDR139C BNI1P41832 1953 aa0.23□□□□□ -2.37
RUB1YDR139C RPL22AP05749 121 aaKnown RBP0.22□□□□□ -2.37
RUB1YDR139C GIM4P40005 111 aaKnown RBP0.22□□□□□ -2.37
RUB1YDR139C SEC59P20048 519 aa0.21□□□□□ -2.38
RUB1YDR139C YEA6P39953 335 aa0.21□□□□□ -2.38
Retrieved 100 of 5,963 RNA–protein pairs in 218.6 ms