RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PIK3R5Q8WYR1 880 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 ZDHHC18Q9NUE0 388 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 SIX4Q9UIU6 781 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 TCRBV5S1A1TA0A578 114 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 CSDE1O75534 798 aaKnown RBP19.4■□□□□ 0.7
CLN3-263ENST00000637871 GAS8O95995 478 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 VDRP11473 427 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 CD58P19256 250 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 OSTNP61366 133 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 SKOR1P84550 965 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 MBTPS1Q14703 1052 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 TRADDQ15628 312 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 CCNG2Q16589 344 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 SLC10A6Q3KNW5 377 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 WDR72Q3MJ13 1102 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 PASD1Q8IV76 773 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 ARFGAP2Q8N6H7 521 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 ATL2Q8NHH9 583 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 OSMRQ99650 979 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 DNAI2Q9GZS0 605 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 WHRNQ9P202 907 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 PLAAQ9Y263 795 aa19.4■□□□□ 0.7
CLN3-263ENST00000637871 KIAA0355O15063 1070 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 GPR32O75388 356 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 WEE2P0C1S8 567 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 MYZAPP0CAP1 466 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 ITIH2P19823 946 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 BRD2P25440 801 aaKnown RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 PTPN7P35236 360 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 ACTN2P35609 894 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 DHX9Q08211 1270 aaKnown RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 MGAT3Q09327 533 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 ZNF268Q14587 947 aaPredicted RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 DCUN1D2Q6PH85 259 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 CEP128Q6ZU80 1094 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 LRRC8DQ7L1W4 858 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 ADAT2Q7Z6V5 191 aaKnown RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 DDX42Q86XP3 938 aaKnown RBP eCLIP19.39■□□□□ 0.69
CLN3-263ENST00000637871 CEP120Q8N960 986 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 TMEM40Q8WWA1 233 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 RIN2Q8WYP3 895 aaPredicted RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 C18orf8Q96DM3 657 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 TRIM51Q9BSJ1 452 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 TXLNGYQ9BZA5 131 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 DPH5Q9H2P9 285 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 NXF1Q9UBU9 619 aaKnown RBP19.39■□□□□ 0.69
CLN3-263ENST00000637871 EFR3BQ9Y2G0 817 aa19.39■□□□□ 0.69
CLN3-263ENST00000637871 CALCAP01258 141 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 IVLP07476 585 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CFHP08603 1231 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 NFICP08651 508 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 RAG1P15918 1043 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 SELPP16109 830 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 MYO1EQ12965 1108 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CALCOCO2Q13137 446 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 BFSP2Q13515 415 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CNGA2Q16280 664 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 PPP1R15BQ5SWA1 713 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 AGBL2Q5U5Z8 902 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 AADACL2Q6P093 401 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 POLNQ7Z5Q5 900 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 RSPH3Q86UC2 560 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CXorf38Q8TB03 319 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CCHCR1Q8TD31 782 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 TMEM176AQ96HP8 235 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 ATP6V1G3Q96LB4 118 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 ADAMTS10Q9H324 1103 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 PLEKHA4Q9H4M7 779 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 TMBIM4Q9HC24 238 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 TRPV2Q9Y5S1 764 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 CEP290O15078 2479 aa19.38■□□□□ 0.69
CLN3-263ENST00000637871 SIGLEC16A6NMB1 481 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 PITPNM1O00562 1244 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 SHOX2O60902 331 aaPredicted RBP19.37■□□□□ 0.69
CLN3-263ENST00000637871 CILPO75339 1184 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 ITGB3P05106 788 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 FGFR4P22455 802 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 RAD23BP54727 409 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 GYS2P54840 703 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 INCA1Q0VD86 236 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 SLC27A1Q6PCB7 646 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 DRICH1Q6PGQ1 229 aaPredicted RBP19.37■□□□□ 0.69
CLN3-263ENST00000637871 RPAINQ86UA6 219 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 HPDLQ96IR7 371 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 FRMD8P1Q9BZ68 369 aaPredicted RBP19.37■□□□□ 0.69
CLN3-263ENST00000637871 OSBPL8Q9BZF1 889 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 NEUROG2Q9H2A3 272 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 DPP3Q9NY33 737 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 CWC15Q9P013 229 aaKnown RBP19.37■□□□□ 0.69
CLN3-263ENST00000637871 PRKAG2Q9UGJ0 569 aa19.37■□□□□ 0.69
CLN3-263ENST00000637871 BARX2Q9UMQ3 279 aaPredicted RBP19.37■□□□□ 0.69
CLN3-263ENST00000637871 H0YGN5 161 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TIMP1P01033 207 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 NUDT17P0C025 328 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 GHRP10912 638 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 CD19P15391 556 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 RGS19P49795 217 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 YARSP54577 528 aaKnown RBP19.36■□□□□ 0.69
CLN3-263ENST00000637871 SNX16P57768 344 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 GPNMBQ14956 572 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms