RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZCWPW1Q9H0M4 648 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 TMEM60Q9H2L4 133 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 LINC00597Q9H2U6 94 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 TMEM134Q9H6X4 195 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 DKK4Q9UBT3 224 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 MAGED2Q9UNF1 606 aaPredicted RBP15.76■□□□□ 0.11
CLN3-249ENST00000636685 APOBEC2Q9Y235 224 aaKnown RBP15.76■□□□□ 0.11
CLN3-249ENST00000636685 TCHHQ07283 1943 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 HECTD1Q9ULT8 2610 aa15.76■□□□□ 0.11
CLN3-249ENST00000636685 SGK1O00141 431 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 GJB3O75712 270 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 KLF8O95600 359 aaPredicted RBP15.75■□□□□ 0.11
CLN3-249ENST00000636685 HAPLN1P10915 354 aaPredicted RBP15.75■□□□□ 0.11
CLN3-249ENST00000636685 ODC1P11926 461 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 XBP1P17861 261 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 GPR15P49685 360 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 MRPS21P82921 87 aaKnown RBP15.75■□□□□ 0.11
CLN3-249ENST00000636685 FAM160A1Q05DH4 1040 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 USP4Q13107 963 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 NR1H3Q13133 447 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 ZBTB6Q15916 424 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 ZNF605Q86T29 641 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 PGBD3Q8N328 593 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 ZNF274Q96GC6 653 aaPredicted RBP15.75■□□□□ 0.11
CLN3-249ENST00000636685 SLC22A12Q96S37 553 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 CYP2S1Q96SQ9 504 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 POLMQ9NP87 494 aaPredicted RBP15.75■□□□□ 0.11
CLN3-249ENST00000636685 ZDHHC4Q9NPG8 344 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 ARHGAP28Q9P2N2 729 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 RAI2Q9Y5P3 530 aa15.75■□□□□ 0.11
CLN3-249ENST00000636685 A0A087WV48 116 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 TK2O00142 265 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 TADA3O75528 432 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 SYPP08247 313 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 RPA1P27694 616 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 PSMA5P28066 241 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 TIE1P35590 1138 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 KRT2P35908 639 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 LILRA4P59901 499 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 RPL6Q02878 288 aaKnown RBP15.74■□□□□ 0.11
CLN3-249ENST00000636685 SLC14A1Q13336 389 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 BYSLQ13895 437 aaKnown RBP15.74■□□□□ 0.11
CLN3-249ENST00000636685 NOLC1Q14978 699 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLN3-249ENST00000636685 GAB4Q2WGN9 574 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 LRRTM3Q86VH5 581 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 IL17RCQ8NAC3 791 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 BHMT2Q9H2M3 363 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 TRPC7Q9HCX4 862 aa15.74■□□□□ 0.11
CLN3-249ENST00000636685 ABI2Q9NYB9 513 aaPredicted RBP15.74■□□□□ 0.11
CLN3-249ENST00000636685 UBQLN1Q9UMX0 589 aaKnown RBP15.74■□□□□ 0.11
CLN3-249ENST00000636685 PTPRQQ9UMZ3 2332 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 TCRBV21S2A2A0A5A6 115 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 ATXN7O15265 892 aaPredicted RBP15.73■□□□□ 0.11
CLN3-249ENST00000636685 AP5Z1O43299 807 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 CHRM1P11229 460 aaPredicted RBP15.73■□□□□ 0.11
CLN3-249ENST00000636685 CYP3A5P20815 502 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 ZNF33AQ06730 810 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 MESP2Q0VG99 397 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 ECM1Q16610 540 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 ZC2HC1CQ53FD0 456 aaPredicted RBP15.73■□□□□ 0.11
CLN3-249ENST00000636685 EMC10Q5UCC4 262 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 SDHAF4Q5VUM1 108 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 TMPRSS7Q7RTY8 843 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 RABEPKQ7Z6M1 372 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 SCUBE3Q8IX30 993 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 DAW1Q8N136 415 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 SPRYD3Q8NCJ5 442 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 PIP4K2CQ8TBX8 421 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 KMT5AQ9NQR1 393 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 MYH11P35749 1972 aa15.73■□□□□ 0.11
CLN3-249ENST00000636685 STK36Q9NRP7 1315 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 TTC26A0AVF1 554 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 TRABD2BA6NFA1 517 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 ADAM23O75077 832 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 CBFA2T3O75081 653 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 CKMP06732 381 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 SLC6A11P48066 632 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 BMP2KLQ5H9B9 411 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 RUFY3Q7L099 469 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 SKAP1Q86WV1 359 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 ZNF843Q8N446 348 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 SPPL2BQ8TCT7 592 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 SH3RF2Q8TEC5 729 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 DCBLD2Q96PD2 775 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 PLEKHA5Q9HAU0 1116 aa15.72■□□□□ 0.11
CLN3-249ENST00000636685 KNTC1P50748 2209 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 LACTBL1A8MY62 500 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 SLC16A4O15374 487 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 TOM1L1O75674 476 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 CDKL5O76039 1030 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 NFATC1O95644 943 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 CYP11A1P05108 521 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 USP17L7P0C7H9 530 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 TNFSF9P41273 254 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 ABCG1P45844 678 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 EOGTQ5NDL2 527 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 GLRX5Q86SX6 157 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 SLC41A1Q8IVJ1 513 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 ERMNQ8TAM6 284 aa15.71■□□□□ 0.11
CLN3-249ENST00000636685 C2orf15Q8WU43 125 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms