RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 C9orf131Q5VYM1 1079 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 TMEM86AQ8N2M4 240 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ARL8AQ96BM9 186 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 TRPV6Q9H1D0 765 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ZNF408Q9H9D4 720 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 NSMCE4AQ9NXX6 385 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 RGPD3A6NKT7 1758 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 RGPD4Q7Z3J3 1758 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 SMIM35A0A1B0GVV1 85 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ALDH1A1P00352 501 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 YWHAGP61981 247 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 BASP1P80723 227 aaKnown RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 LMBRD2Q68DH5 695 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 LRRC71Q8N4P6 559 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 RSPH1Q8WYR4 309 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ALG3Q92685 438 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 SEMA4DQ92854 862 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 HEMGNQ9BXL5 484 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 CDC42EP4Q9H3Q1 356 aaKnown RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 CAPN7Q9Y6W3 813 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 DDNO94850 711 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ITGB3P05106 788 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 CA4P22748 312 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ZNF143P52747 638 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 SREBF2Q12772 1141 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 GPS1Q13098 491 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 DBN1Q16643 649 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 HEATR6Q6AI08 1181 aaKnown RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 SCARA5Q6ZMJ2 495 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 RPAINQ86UA6 219 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 TDRPQ86YL5 185 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 PI4K2AQ9BTU6 479 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 ZFYVE28Q9HCC9 887 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 GBA2Q9HCG7 927 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.78□□□□□ -1.64
SCN1A-210ENST00000635776 DSEQ9UL01 958 aa4.78□□□□□ -1.64
SCN1A-210ENST00000635776 CST8O60676 142 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 CHRNB2P17787 502 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 CDH6P55285 790 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 EIF3EP60228 445 aaKnown RBP4.78□□□□□ -1.65
SCN1A-210ENST00000635776 DDX42Q86XP3 938 aaKnown RBP eCLIP4.78□□□□□ -1.65
SCN1A-210ENST00000635776 PASD1Q8IV76 773 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 SRRM1Q8IYB3 904 aaKnown RBP4.78□□□□□ -1.65
SCN1A-210ENST00000635776 PITPNM3Q9BZ71 974 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 COG5Q9UP83 839 aa4.78□□□□□ -1.65
SCN1A-210ENST00000635776 SOWAHBA6NEL2 793 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 IGF2BP3O00425 579 aaKnown RBP eCLIP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TM9SF1O15321 606 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 RPL21P46778 160 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 LHX1P48742 406 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 OSTNP61366 133 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ZBTB16Q05516 673 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 PDIA2Q13087 525 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 XRCC4Q13426 336 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ZNF394Q53GI3 561 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CCDC62Q6P9F0 684 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 LCLAT1Q6UWP7 414 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CCDC63Q8NA47 563 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TSEN2Q8NCE0 465 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 RIN2Q8WYP3 895 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TAF1LQ8IZX4 1826 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GLTPD2A6NH11 291 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 AGPSO00116 658 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ACSL3O95573 720 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 MMP13P45452 471 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GEMIN4P57678 1058 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 IFT88Q13099 833 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ARMC3Q5W041 872 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 KAT5Q92993 513 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 POP1Q99575 1024 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 PAIP2Q9BPZ3 127 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CHST12Q9NRB3 414 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TAS2R14Q9NYV8 317 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GINS2Q9Y248 185 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 C17orf102A2RUQ5 167 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CARNS1A5YM72 827 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ERI2A8K979 691 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TRAPPC3O43617 180 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 VPS41P49754 854 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GYS2P54840 703 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 LAMB3Q13751 1172 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 PDK1Q15118 436 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TMED2Q15363 201 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GRIK4Q16099 956 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 BBS5Q8N3I7 341 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ANKRD42Q8N9B4 389 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GIMAP7Q8NHV1 300 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 ZNF398Q8TD17 642 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CD101Q93033 1021 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 VAT1Q99536 393 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 SIKE1Q9BRV8 207 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TINF2Q9BSI4 451 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GPR88Q9GZN0 384 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 GOLPH3Q9H4A6 298 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 NGRNQ9NPE2 291 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 SLC12A6Q9UHW9 1150 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CLUHO75153 1309 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 A0A087WZ62 844 aa4.77□□□□□ -1.65
SCN1A-210ENST00000635776 TRDMT1O14717 391 aaKnown RBP4.77□□□□□ -1.65
SCN1A-210ENST00000635776 CILPO75339 1184 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms