RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	MCRS1	Q96EZ8	462 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	FNBP1	Q96RU3	617 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	NELL2	Q99435	816 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	CGRRF1	Q99675	332 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	GCNT4	Q9P109	453 aa		13.58	□□□□□ -0.24
UPF1-208	ENST00000600012	WDR27	A2RRH5	827 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012		H7C4K7	107 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	EPHB6	O15197	1021 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	NCAM2	O15394	837 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	MEFV	O15553	781 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	ABLIM3	O94929	683 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	ATF2	P15336	505 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	KCNE1	P15382	129 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	CEBPB	P17676	345 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	TNNI1	P19237	187 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	SLC9A1	P19634	815 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	RPL9	P32969	192 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	MCCD1	P59942	119 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	GBP6	Q6ZN66	633 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	TPRG1	Q6ZUI0	275 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	TCEAL8	Q8IYN2	117 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	SUMF1	Q8NBK3	374 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	NEK11	Q8NG66	645 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF516	Q92618	1163 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	DNASE1L2	Q92874	299 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	RMDN1	Q96DB5	314 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	ACAP3	Q96P50	834 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	RPF1	Q9H9Y2	349 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	CNTN3	Q9P232	1028 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	MRPS17	Q9Y2R5	130 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	MTF2	Q9Y483	593 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	NUB1	Q9Y5A7	615 aa		13.57	□□□□□ -0.24
UPF1-208	ENST00000600012	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.57	□□□□□ -0.24	7e-8	■■□□□ 12.6
UPF1-208	ENST00000600012	GTPBP10	A4D1E9	387 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	RNF225	M0QZC1	329 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF197	O14709	1029 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TBC1D4	O60343	1298 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	STX10	O60499	249 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	MFAP3L	O75121	409 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CLTA	P09496	248 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TRIM21	P19474	475 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CD72	P21854	359 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TARS	P26639	723 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CASP14	P31944	242 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	RPS9	P46781	194 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	ENPEP	Q07075	957 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TRIM14	Q14142	442 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	EXOC3L4	Q17RC7	722 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	PRSS36	Q5K4E3	855 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TPGS2	Q68CL5	300 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	USP37	Q86T82	979 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	EFCAB13	Q8IY85	973 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	OR5B17	Q8NGF7	314 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CLDN23	Q96B33	292 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	ELSPBP1	Q96BH3	223 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	ZMAT2	Q96NC0	199 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CORO1B	Q9BR76	489 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TTYH3	Q9C0H2	523 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	INTS2	Q9H0H0	1204 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	CYP4F11	Q9HBI6	524 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TMEM8A	Q9HCN3	771 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	PCDHGA2	Q9Y5H1	932 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	INSL5	Q9Y5Q6	135 aa		13.56	□□□□□ -0.24
UPF1-208	ENST00000600012	TTC26	A0AVF1	554 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	LACTBL1	A8MY62	500 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	MICAL2	O94851	1124 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	PON1	P27169	355 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	GTF2H1	P32780	548 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ADK	P55263	362 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ARPP19	P56211	112 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	GSDMD	P57764	484 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	CLDN10	P78369	228 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	CSTF1	Q05048	431 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	MRPL58	Q14197	206 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	SURF1	Q15526	300 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	KYAT1	Q16773	422 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	SLC10A6	Q3KNW5	377 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	CTXN3	Q4LDR2	81 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	KRT39	Q6A163	491 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	TANGO2	Q6ICL3	276 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF280D	Q6N043	979 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	DPY19L2P1	Q6NXN4	242 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF852	Q6ZMS4	543 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	PDZD4	Q76G19	769 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	SV2A	Q7L0J3	742 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	DGLUCY	Q7Z3D6	616 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	WDR49	Q8IV35	697 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ELMOD1	Q8N336	334 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	DCLK2	Q8N568	766 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	CCDC150	Q8NCX0	1101 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ATRIP	Q8WXE1	791 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	SUSD3	Q96L08	255 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF830	Q96NB3	372 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	PLA2G2F	Q9BZM2	168 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	GAN	Q9H2C0	597 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	ZFP14	Q9HCL3	533 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	SIX2	Q9NPC8	291 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.55	□□□□□ -0.24

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