RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CEP57L1Q8IYX8 460 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 SPEM1Q8N4L4 309 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 DCLK2Q8N568 766 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 FSIP1Q8NA03 581 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 RDH13Q8NBN7 331 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 OR5B17Q8NGF7 314 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 ZNF507Q8TCN5 953 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 TRMT2BQ96GJ1 504 aaKnown RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 MMS19Q96T76 1030 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 PKMYT1Q99640 499 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 C7orf25Q9BPX7 421 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 SYT15Q9BQS2 421 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 BLZF1Q9H2G9 400 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 TRPC7Q9HCX4 862 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 AGPAT3Q9NRZ7 376 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 RBM12Q9NTZ6 932 aaKnown RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 TDP1Q9NUW8 608 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 GMEB2Q9UKD1 530 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CFAP45Q9UL16 551 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CDH9Q9ULB4 789 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 DMDP11532 3685 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 PTPRJQ12913 1337 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 ZFHX2Q9C0A1 2572 aaPredicted RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 FANCMQ8IYD8 2048 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CLIC2O15247 247 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 HCRTO43612 131 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CLSTN1O94985 981 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 ANXA13P27216 316 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 HOXD13P35453 343 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 AFMP43652 599 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 PSMC1P62191 440 aaKnown RBP10.49□□□□□ -0.73
VRK3-216ENST00000599342 TNNC1P63316 161 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 AMPD2Q01433 879 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 SCARA3Q6AZY7 606 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 TXNDC11Q6PKC3 985 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 Q6ZS52 159 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 TMEM150AQ86TG1 271 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 MON1AQ86VX9 555 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 SYNPOQ8N3V7 929 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 GPR161Q8N6U8 529 aaKnown RBP10.49□□□□□ -0.73
VRK3-216ENST00000599342 XXYLT1Q8NBI6 393 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 TTC16Q8NEE8 873 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 USP13Q92995 863 aaPredicted RBP10.49□□□□□ -0.73
VRK3-216ENST00000599342 MYLPFQ96A32 169 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 EXOC4Q96A65 974 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CCDC127Q96BQ5 260 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CGRRF1Q99675 332 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 GKN1Q9NS71 199 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CGNQ9P2M7 1197 aaKnown RBP10.49□□□□□ -0.73
VRK3-216ENST00000599342 MAGEC2Q9UBF1 373 aaPredicted RBP10.49□□□□□ -0.73
VRK3-216ENST00000599342 PCDHA7Q9UN72 937 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CCL26Q9Y258 94 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 CACNA1IQ9P0X4 2223 aa10.49□□□□□ -0.73
VRK3-216ENST00000599342 TRAV19A0A0A6YYK7 116 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 PVALEFA0A1B0GWK0 134 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TGFB1I1O43294 461 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TADA3O75528 432 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CKMP06732 381 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 USP17L7P0C7H9 530 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TDGF1P13385 188 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 WARSP23381 471 aaKnown RBP10.48□□□□□ -0.73
VRK3-216ENST00000599342 LMO2P25791 158 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CASP1P29466 404 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 GRIK1P39086 918 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 MAGEA11P43364 429 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 PDE6CP51160 858 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CYP27A1Q02318 531 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 FAM160A1Q05DH4 1040 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CYP24A1Q07973 514 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 GRSF1Q12849 480 aaKnown RBP eCLIP10.48□□□□□ -0.73
VRK3-216ENST00000599342 TRPC3Q13507 836 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 RUNX3Q13761 415 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CCINQ13939 588 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 GAS6Q14393 721 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 ZNF268Q14587 947 aaPredicted RBP10.48□□□□□ -0.73
VRK3-216ENST00000599342 KCNB1Q14721 858 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 PSMD6Q15008 389 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 CCDC142Q17RM4 750 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 RESP18Q5W5W9 173 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TRIM68Q6AZZ1 485 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 FAM171BQ6P995 826 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 VSTM1Q6UX27 236 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 PRR23BQ6ZRT6 265 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TRAPPC11Q7Z392 1133 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 SCFD1Q8WVM8 642 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 KBTBD7Q8WVZ9 684 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 RMDN1Q96DB5 314 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 MYRFLQ96LU7 910 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 FAM83CQ9BQN1 747 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 SNX25Q9H3E2 840 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 EBF3Q9H4W6 596 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 SLC39A2Q9NP94 309 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 EHD2Q9NZN4 543 aa10.48□□□□□ -0.73
VRK3-216ENST00000599342 TRIM66O15016 1216 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 EXOC3O60645 756 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 PHACTR2O75167 634 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 ATP2C2O75185 946 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 PAPSS2O95340 614 aaPredicted RBP10.47□□□□□ -0.73
VRK3-216ENST00000599342 PDGFRBP09619 1106 aa10.47□□□□□ -0.73
VRK3-216ENST00000599342 BDNFP23560 247 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms