RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 MOSPD3O75425 235 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 C8AP07357 584 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 CCDC130P13994 396 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 CPB1P15086 417 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 HMGA1P17096 107 aaKnown RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 MAGEA11P43364 429 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 UBASH3AP57075 661 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 TFF2Q03403 129 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 DRAP1Q14919 205 aaPredicted RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 ARHGAP17Q68EM7 881 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 SMYD5Q6GMV2 418 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 SARM1Q6SZW1 724 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 GPR149Q86SP6 731 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 TTC30AQ86WT1 665 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 DCP1BQ8IZD4 617 aaKnown RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 SMRP1Q8NCR6 262 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 STKLD1Q8NE28 680 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 SLC7A14Q8TBB6 771 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 CASP10Q92851 521 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 KCNK16Q96T55 309 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 HNRNPABQ99729 332 aaKnown RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 SMOQ99835 787 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 STK33Q9BYT3 514 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 ABCB6Q9NP58 842 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 FAM207AQ9NSI2 230 aaPredicted RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 DNMT3BQ9UBC3 853 aaKnown RBP11.25□□□□□ -0.61
LIG1-210ENST00000596332 YIPF1Q9Y548 306 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 INSL5Q9Y5Q6 135 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 UNC80Q8N2C7 3258 aa11.25□□□□□ -0.61
LIG1-210ENST00000596332 CCDC195A0A1B0GUA6 201 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 GOLGA6L19H0YKK7 550 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 TULP2O00295 520 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 O00370 1275 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 TNFRSF10BO14763 440 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 POU2F2P09086 479 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 PAEPP09466 180 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 BDNFP23560 247 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 HOXA9P31269 272 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 CCR2P41597 374 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 TSPY1Q01534 308 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 SMARCB1Q12824 385 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 NFE2Q16621 373 aaPredicted RBP11.24□□□□□ -0.61
LIG1-210ENST00000596332 DDR2Q16832 855 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 ARHGAP44Q17R89 818 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 FKBP15Q5T1M5 1219 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 SDHAF4Q5VUM1 108 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 E4F1Q66K89 784 aaPredicted RBP11.24□□□□□ -0.61
LIG1-210ENST00000596332 TMEM270Q6UE05 265 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 RTL10Q7L3V2 364 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 ENOSF1Q7L5Y1 443 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 TMEM150AQ86TG1 271 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 TMC8Q8IU68 726 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 WDTC1Q8N5D0 677 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 RBBP8NLQ8NC74 664 aaPredicted RBP11.24□□□□□ -0.61
LIG1-210ENST00000596332 CCDC150Q8NCX0 1101 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 SPPL2BQ8TCT7 592 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 SLC2A14Q8TDB8 520 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 C2orf15Q8WU43 125 aaKnown RBP11.24□□□□□ -0.61
LIG1-210ENST00000596332 DDX1Q92499 740 aaKnown RBP11.24□□□□□ -0.61
LIG1-210ENST00000596332 HLA-CQ95604 372 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 CYFIP2Q96F07 1278 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 FUBP3Q96I24 572 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIG1-210ENST00000596332 APOL5Q9BWW9 433 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 PRKD2Q9BZL6 878 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 ADAM7Q9H2U9 754 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 CYP4F11Q9HBI6 524 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 FAM49BQ9NUQ9 324 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 HCFC1R1Q9NWW0 138 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 ZDHHC7Q9NXF8 308 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 IL37Q9NZH6 218 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 PCDHB5Q9Y5E4 795 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 PCDHB4Q9Y5E5 795 aa11.24□□□□□ -0.61
LIG1-210ENST00000596332 PTPRDP23468 1912 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 C5orf42Q9H799 3197 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 F8VZ95 297 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 PES1O00541 588 aaKnown RBP11.23□□□□□ -0.61
LIG1-210ENST00000596332 CYP26A1O43174 497 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 MBTPS2O43462 519 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 SERPINC1P01008 464 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 HNRNPA1P09651 372 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG1-210ENST00000596332 VDRP11473 427 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 HOXB8P17481 243 aaPredicted RBP11.23□□□□□ -0.61
LIG1-210ENST00000596332 KCNA5P22460 613 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 PGFP49763 221 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 EPHA5P54756 1037 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 MFAP3P55082 362 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 POLR2FP61218 127 aaKnown RBP11.23□□□□□ -0.61
LIG1-210ENST00000596332 USP46P62068 366 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 NTHL1P78549 312 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 MTMR3Q13615 1198 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 CLUL1Q15846 466 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 CNGA2Q16280 664 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 LEXMQ3ZCV2 418 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 RARS2Q5T160 578 aaKnown RBP11.23□□□□□ -0.61
LIG1-210ENST00000596332 TMC5Q6UXY8 1006 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 CLEC20AQ6ZU45 233 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 IRF2BP2Q7Z5L9 587 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 FAM35AQ86V20 835 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 HS6ST3Q8IZP7 471 aa11.23□□□□□ -0.61
LIG1-210ENST00000596332 TTC39CQ8N584 583 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms