RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CRYBG2Q8N1P7 616 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 GIPC2Q8TF65 315 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 CNOT6LQ96LI5 555 aaKnown RBP16.01■□□□□ 0.15
UPF1-202ENST00000594243 CEP295NLQ96MC4 621 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 LPIN3Q9BQK8 851 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 GPR88Q9GZN0 384 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 DPEP3Q9H4B8 488 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 THAP9Q9H5L6 903 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 ANO10Q9NW15 660 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 GDE1Q9NZC3 331 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 MUTYHQ9UIF7 546 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 DENND4AQ7Z401 1863 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 BDNFP23560 247 aa16■□□□□ 0.15
UPF1-202ENST00000594243 GRIK1P39086 918 aa16■□□□□ 0.15
UPF1-202ENST00000594243 INCA1Q0VD86 236 aa16■□□□□ 0.15
UPF1-202ENST00000594243 PTPN21Q16825 1174 aa16■□□□□ 0.15
UPF1-202ENST00000594243 DDR2Q16832 855 aa16■□□□□ 0.15
UPF1-202ENST00000594243 SLC5A9Q2M3M2 681 aa16■□□□□ 0.15
UPF1-202ENST00000594243 ACOT1Q86TX2 421 aa16■□□□□ 0.15
UPF1-202ENST00000594243 SCN4BQ8IWT1 228 aa16■□□□□ 0.15
UPF1-202ENST00000594243 KHSRPQ92945 711 aaKnown RBP eCLIP16■□□□□ 0.15
UPF1-202ENST00000594243 TATDN2Q93075 761 aa16■□□□□ 0.15
UPF1-202ENST00000594243 NT5C1AQ9BXI3 368 aa16■□□□□ 0.15
UPF1-202ENST00000594243 LRRC3Q9BY71 257 aa16■□□□□ 0.15
UPF1-202ENST00000594243 ELOVL4Q9GZR5 314 aa16■□□□□ 0.15
UPF1-202ENST00000594243 KCNK12Q9HB15 430 aa16■□□□□ 0.15
UPF1-202ENST00000594243 SORCS3Q9UPU3 1222 aa16■□□□□ 0.15
UPF1-202ENST00000594243 ATP8B3O60423 1300 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 TRIM66O15016 1216 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 CD58P19256 250 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 TBXAS1P24557 533 aaPredicted RBP15.99■□□□□ 0.15
UPF1-202ENST00000594243 ANXA13P27216 316 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 CCR2P41597 374 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 YWHAEP62258 255 aaKnown RBP15.99■□□□□ 0.15
UPF1-202ENST00000594243 MTMR3Q13615 1198 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 CCDC142Q17RM4 750 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 MTSS1LQ765P7 747 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 TMC8Q8IU68 726 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 NPAS3Q8IXF0 933 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 EHBP1Q8NDI1 1231 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 ENOX1Q8TC92 643 aaKnown RBP15.99■□□□□ 0.15
UPF1-202ENST00000594243 GPR152Q8TDT2 470 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 ING5Q8WYH8 240 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 TCEAL4Q96EI5 215 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 MCRS1Q96EZ8 462 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 SPATA17Q96L03 361 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 MED10Q9BTT4 135 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 B3GNT5Q9BYG0 378 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 EHD2Q9NZN4 543 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 TMEM63CQ9P1W3 806 aa15.99■□□□□ 0.15
UPF1-202ENST00000594243 UXTQ9UBK9 157 aaPredicted RBP15.99■□□□□ 0.15
UPF1-202ENST00000594243 A0A1W2PRU2 124 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 CILPO75339 1184 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 LETM1O95202 739 aaPredicted RBP15.98■□□□□ 0.15
UPF1-202ENST00000594243 PRKCSHP14314 528 aaPredicted RBP15.98■□□□□ 0.15
UPF1-202ENST00000594243 CEBPBP17676 345 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 GABRR2P28476 465 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 CDC25CP30307 473 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 MTIF2P46199 727 aaKnown RBP15.98■□□□□ 0.15
UPF1-202ENST00000594243 GPR15P49685 360 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 TDGQ13569 410 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 CUL2Q13617 745 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 STX1AQ16623 288 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 ARHGAP15Q53QZ3 475 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 IRF2BP1Q8IU81 584 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 UBALD2Q8IYN6 164 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 EDAQ92838 391 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 C8orf48Q96LL4 319 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 NT5C1BQ96P26 610 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 GCNAQ96QF7 691 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 ATXN3LQ9H3M9 355 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 EPHX3Q9H6B9 360 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 CISHQ9NSE2 258 aa15.98■□□□□ 0.15
UPF1-202ENST00000594243 MAGED2Q9UNF1 606 aaPredicted RBP15.98■□□□□ 0.15
UPF1-202ENST00000594243 SLC38A8A6NNN8 435 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 ANHXE9PGG2 379 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 MOSPD3O75425 235 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 NOL4O94818 638 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 ASGR2P07307 311 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 HMGA1P17096 107 aaKnown RBP15.97■□□□□ 0.15
UPF1-202ENST00000594243 ZXDAP98168 799 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 LRMPQ12912 555 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 TEAD2Q15562 447 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 KLHL40Q2TBA0 621 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 SDHAF4Q5VUM1 108 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 CAVIN1Q6NZI2 390 aaKnown RBP15.97■□□□□ 0.15
UPF1-202ENST00000594243 LMO3Q8TAP4 145 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 SHKBP1Q8TBC3 707 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 WHAMMQ8TF30 809 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 TRMT2BQ96GJ1 504 aaKnown RBP15.97■□□□□ 0.15
UPF1-202ENST00000594243 TMEM176AQ96HP8 235 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 MYRFLQ96LU7 910 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 C1QTNF1Q9BXJ1 281 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 ZNF518BQ9C0D4 1074 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 ZNF334Q9HCZ1 680 aaPredicted RBP15.97■□□□□ 0.15
UPF1-202ENST00000594243 ZMYM5Q9UJ78 669 aa15.97■□□□□ 0.15
UPF1-202ENST00000594243 CLDN5O00501 218 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 GJA1P17302 382 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 ORC1Q13415 861 aa15.96■□□□□ 0.15
UPF1-202ENST00000594243 HTR4Q13639 388 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms