RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 GINS2Q9Y248 185 aa8.77□□□□□ -1.01
SMAD4-209ENST00000589941 SHROOM3Q8TF72 1996 aa8.77□□□□□ -1.01
SMAD4-209ENST00000589941 KDM3AQ9Y4C1 1321 aa8.77□□□□□ -1.01
SMAD4-209ENST00000589941 TDRD15B5MCY1 1934 aaKnown RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 MYH9P35579 1960 aaKnown RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 GSTTP1A0A1W2PQM5 241 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 SSU72P8A0A1W2PR75 194 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 RNF113AO15541 343 aaKnown RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 ZNF205O95201 554 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 GSNP06396 782 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 TGFB3P10600 412 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 CTSAP10619 480 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 LAMP2P13473 410 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 INSRRP14616 1297 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 VAV1P15498 845 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 GNAT2P19087 354 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 CCND2P30279 289 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 TRHRP34981 398 aaPredicted RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 BCAR1P56945 870 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 PPP2R5DQ14738 602 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 SKOR2Q2VWA4 1001 aaPredicted RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 RRP12Q5JTH9 1297 aaKnown RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 C15orf39Q6ZRI6 1047 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 FAM228AQ86W67 206 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 CELF2-AS1Q8N7Q2 184 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 KBTBD3Q8NAB2 608 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 CLDN23Q96B33 292 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 KIF1BPQ96EK5 621 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 BORCS6Q96GS4 357 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 INPP4AQ96PE3 977 aaPredicted RBP8.76□□□□□ -1.01
SMAD4-209ENST00000589941 PCYT2Q99447 389 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 C1orf112Q9NSG2 853 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 WHRNQ9P202 907 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 APEX2Q9UBZ4 518 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 ST3GAL5Q9UNP4 418 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 IRAK3Q9Y616 596 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 FRMPD4Q14CM0 1322 aa8.76□□□□□ -1.01
SMAD4-209ENST00000589941 M0QZ92 97 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 INPPL1O15357 1258 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 KLF4O43474 513 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 ORC4O43929 436 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 RPS6KA5O75582 802 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 PRB1P04280 392 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 SLC3A2P08195 630 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 CNPP09543 421 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 JUNBP17275 347 aaPredicted RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 NOVA1P51513 510 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 FAM189BP81408 668 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 SIM2Q14190 667 aaPredicted RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 PLCB4Q15147 1175 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 COL28A1Q2UY09 1125 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 RTP2Q5QGT7 225 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 MRM1Q6IN84 353 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 TCEAL6Q6IPX3 200 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 TPRG1Q6ZUI0 275 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 ADAT2Q7Z6V5 191 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 RNF169Q8NCN4 708 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 TCEAL3Q969E4 200 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 CCDC120Q96HB5 630 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 KLHL5Q96PQ7 755 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 LSM14BQ9BX40 385 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 SLC12A9Q9BXP2 914 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 JMJD4Q9H9V9 463 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 RTEL1Q9NZ71 1219 aa8.75□□□□□ -1.01
SMAD4-209ENST00000589941 MRPL11Q9Y3B7 192 aaKnown RBP8.75□□□□□ -1.01
SMAD4-209ENST00000589941 PLXNB3Q9ULL4 1909 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 ZNF462Q96JM2 2506 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 CCDC195A0A1B0GUA6 201 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 BIN1O00499 593 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 ZC3H11AO75152 810 aaKnown RBP eCLIP8.74□□□□□ -1.01
SMAD4-209ENST00000589941 HPXP02790 462 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 FNTBP49356 437 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 SATB1Q01826 763 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 NEDD9Q14511 834 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 SLC44A4Q53GD3 710 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 VPS53Q5VIR6 699 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 CELF5Q8N6W0 485 aaKnown RBP8.74□□□□□ -1.01
SMAD4-209ENST00000589941 CMASQ8NFW8 434 aaPredicted RBP8.74□□□□□ -1.01
SMAD4-209ENST00000589941 UBE2Q2Q8WVN8 375 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 SMG7Q92540 1137 aaKnown RBP8.74□□□□□ -1.01
SMAD4-209ENST00000589941 TMEM169Q96HH4 297 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 KXD1Q9BQD3 176 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 LGR4Q9BXB1 951 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 OSBPL6Q9BZF3 934 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 TOMM22Q9NS69 142 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 AP5S1Q9NUS5 200 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 ZMYM5Q9UJ78 669 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 PCDHA1Q9Y5I3 950 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.74□□□□□ -1.01
SMAD4-209ENST00000589941 KIAA1549LQ6ZVL6 1849 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 VWA8A3KMH1 1905 aa8.74□□□□□ -1.01
SMAD4-209ENST00000589941 F5P12259 2224 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 MYO16Q9Y6X6 1858 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 FIBPO43427 364 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 SMARCA5O60264 1052 aaPredicted RBP8.73□□□□□ -1.01
SMAD4-209ENST00000589941 ATP9AO75110 1047 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 C1QL1O75973 258 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 DDAH1O94760 285 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 SPATA31D3P0C874 917 aa8.73□□□□□ -1.01
SMAD4-209ENST00000589941 MAGEA9P43362 315 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms