RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 GAD1Q99259 594 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 CRACR2AQ9BSW2 395 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 LSM14BQ9BX40 385 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 IMPG2Q9BZV3 1241 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 MTMR12Q9C0I1 747 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TMEM117Q9H0C3 514 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 RNF19AQ9NV58 838 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 SLC38A7Q9NVC3 462 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 INTS13Q9NVM9 706 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TMEM161AQ9NX61 479 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 DPP3Q9NY33 737 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 GCNT4Q9P109 453 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 UBQLN1Q9UMX0 589 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 GIT1Q9Y2X7 761 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 DERAQ9Y315 318 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 C2CD2Q9Y426 696 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 NR2E3Q9Y5X4 410 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 PTPRJQ12913 1337 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 RALGAPA2Q2PPJ7 1873 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 ALPK3Q96L96 1907 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 DNAH12Q6ZR08 3092 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 SMIM28A0A1B0GU29 152 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 A0A1W2PQC6 194 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 GTPBP10A4D1E9 387 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 MEIS3P2A8K0S8 358 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 MEFVO15553 781 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 BAIAP3O94812 1187 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 POMCP01189 267 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 HLA-DRAP01903 254 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FGBP02675 491 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 C4BPAP04003 597 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 ITGB3P05106 788 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 PTMAP06454 111 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 THP07101 528 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FGFR1P11362 822 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ACPPP15309 386 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 KCNE1P15382 129 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ATF7P17544 494 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 TRIM21P19474 475 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 POLR2BP30876 1174 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 GATA4P43694 442 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 KLK7P49862 253 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 SCNN1GP51170 649 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FAM189BP81408 668 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 RBP5P82980 135 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 RNASELQ05823 741 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 LRMPQ12912 555 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 GRIK3Q13003 919 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ZACNQ401N2 412 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 C1orf220Q5T0J3 134 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 TDRD10Q5VZ19 366 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 SPECC1LQ69YQ0 1117 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 PSRC1Q6PGN9 363 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 IGF2-ASQ6U949 168 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIG3-210ENST00000588109 AGMOQ6ZNB7 445 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 OTOP2Q7RTS6 562 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 TRAPPC11Q7Z392 1133 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 CACNA2D4Q7Z3S7 1137 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 CD163Q86VB7 1156 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 PPFIBP1Q86W92 1011 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 NPAS4Q8IUM7 802 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 VSTM4Q8IW00 320 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FBXL13Q8NEE6 735 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 NEK11Q8NG66 645 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 TAS1R2Q8TE23 839 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 NXPE3Q969Y0 559 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ALKBH8Q96BT7 664 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 FAM84AQ96KN4 292 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ZMAT2Q96NC0 199 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 NT5C1BQ96P26 610 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FAM193BQ96PV7 902 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 NUP58Q9BVL2 599 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ADAM19Q9H013 955 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 INTS2Q9H0H0 1204 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 CXCL16Q9H2A7 254 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ELAC1Q9H777 363 aaKnown RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 LATS2Q9NRM7 1088 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 FAM207AQ9NSI2 230 aaPredicted RBP5.7□□□□□ -1.5
LIG3-210ENST00000588109 RAB20Q9NX57 234 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 TUBGCP4Q9UGJ1 667 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ITGA11Q9UKX5 1188 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIG3-210ENST00000588109 ANK1P16157 1881 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 CITO14578 2027 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 ITIH6Q6UXX5 1313 aa5.7□□□□□ -1.5
LIG3-210ENST00000588109 A0A1W2PP55 124 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 CASTOR2A6NHX0 329 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 TBKBP1A7MCY6 615 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PTGESO14684 152 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 FSCN2O14926 492 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PMM2O15305 246 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 OFD1O75665 1012 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 SLC9A1P19634 815 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 CYP3A5P20815 502 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 PON1P27169 355 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 MAPK8P45983 427 aa5.69□□□□□ -1.5
LIG3-210ENST00000588109 GUCY2FP51841 1108 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms