RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 RBM5P52756 815 aaKnown RBP eCLIP2.35□□□□□ -2.03
CHD3-217ENST00000574022 WNT3P56703 355 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 RNASE9P60153 205 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 YBX1P67809 324 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZBED6P86452 979 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TSPY1Q01534 308 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 SMAD4Q13485 552 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 CUL4AQ13619 759 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 KCNAB1Q14722 419 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 PSMD6Q15008 389 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TAF11Q15544 211 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TARBP2Q15633 366 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 SMAD1Q15797 465 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 MSMPQ1L6U9 139 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 PLA1AQ53H76 456 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 RILPL1Q5EBL4 403 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 MFSD14BQ5SR56 506 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZMYM1Q5SVZ6 1142 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 UBXN11Q5T124 520 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 UTP14CQ5TAP6 766 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 FAM160B1Q5W0V3 765 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ATG16L1Q676U5 607 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TRIM68Q6AZZ1 485 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 FCRL6Q6DN72 434 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZNF529Q6P280 563 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TREML4Q6UXN2 200 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZNF574Q6ZN55 896 aaPredicted RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 SEM1Q6ZVN7 128 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TMTC3Q6ZXV5 915 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZNF365Q70YC5 407 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 UBE3BQ7Z3V4 1068 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TTC30AQ86WT1 665 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 IRF2BP1Q8IU81 584 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ARMC8Q8IUR7 673 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NGEFQ8N5V2 710 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NKAIN3Q8N8D7 197 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 USP38Q8NB14 1042 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 SLC17A8Q8NDX2 589 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 FAM46DQ8NEK8 389 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ABHD4Q8TB40 342 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 CPT1BQ92523 772 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NELL1Q92832 810 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 SCAMP4Q969E2 229 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 GRAMD1AQ96CP6 724 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ZMAT2Q96NC0 199 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 MOGAT1Q96PD6 335 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 WRNIP1Q96S55 665 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 REEP2Q9BRK0 252 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NDC1Q9BTX1 674 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 SPATA5L1Q9BVQ7 753 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TINAGL1Q9GZM7 467 aaPredicted RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 RNF32Q9H0A6 362 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 VPS16Q9H269 839 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 RNPEPQ9H4A4 650 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 FAM83DQ9H4H8 585 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 GSTO2Q9H4Y5 243 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ACAD9Q9H845 621 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 G6PC2Q9NQR9 355 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 EIF2B3Q9NR50 452 aaKnown RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 C19orf73Q9NVV2 129 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NDUFAF4Q9P032 175 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 NFKBIL1Q9UBC1 381 aaPredicted RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 DKK4Q9UBT3 224 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 TBC1D29Q9UFV1 150 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 FAM184BQ9ULE4 1060 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 SLC45A2Q9UMX9 530 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 PLA2G2DQ9UNK4 145 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 C19orf53Q9UNZ5 99 aaPredicted RBP2.35□□□□□ -2.03
CHD3-217ENST00000574022 AGAP1Q9UPQ3 857 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 HPSEQ9Y251 543 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 CNPY2Q9Y2B0 182 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 ATP11BQ9Y2G3 1177 aa2.35□□□□□ -2.03
CHD3-217ENST00000574022 PNMA6EA0A0J9YXQ4 647 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 CCDC78A2IDD5 438 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 J3KTA2 159 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 AP3D1O14617 1153 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 NRP1O14786 923 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 ZSCAN9O15535 394 aaPredicted RBP2.34□□□□□ -2.03
CHD3-217ENST00000574022 RGS10O43665 173 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 DKC1O60832 514 aaKnown RBP eCLIP2.34□□□□□ -2.03
CHD3-217ENST00000574022 PPP6R2O75170 966 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 PTP4A3O75365 173 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 PIAS2O75928 621 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 TOX4O94842 621 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 SASH1O94885 1247 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 HAUS5O94927 633 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 AGFG2O95081 481 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 KIF20AO95235 890 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 RASAL1O95294 804 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 TGFB1P01137 390 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 POMCP01189 267 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 AMHP03971 560 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 DNTTP04053 509 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 JUNP05412 331 aaKnown RBP2.34□□□□□ -2.03
CHD3-217ENST00000574022 CSF1P09603 554 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 SNRPA1P09661 255 aaKnown RBP2.34□□□□□ -2.03
CHD3-217ENST00000574022 HSPA1AP0DMV8 641 aaKnown RBP2.34□□□□□ -2.03
CHD3-217ENST00000574022 HSPA1BP0DMV9 641 aaKnown RBP2.34□□□□□ -2.03
CHD3-217ENST00000574022 VSIG10L2P0DP72 767 aa2.34□□□□□ -2.03
CHD3-217ENST00000574022 ALAS1P13196 640 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms